Scomber scombrus (Atlantic mackerel): 134005882
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Entry
134005882 CDS
T10651
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
134005882 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
134005882 (trpc5a)
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134005882 (trpc5a)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
134005882 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
134005882
NCBI-ProteinID:
XP_062300893
LinkDB
All DBs
Position
23:complement(7034374..7115078)
Genome browser
AA seq
1089 aa
AA seq
DB search
MNPMTQLYYKKATFSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPIGEKQVPALMMDIQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYNGFPGWRRRHWAVKLVTCFIIGLLFPVFSLIYLLAPKSAL
GRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTIVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETQASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEYVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSIWYLLMWLHNKLCTRGQPPGEDTHKCENLREFTERHADSLIQNQHYQ
EVIRSLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVMDLLGNRRPPRRHYSSS
SETMRDDGGMISEDDSESGDGGGGCRKSKGVSFMTPLEDDSRSTLGVSALVRSISGMSQR
GEDEEGEMEEGIGWGQVEEEEEEGKPKSNGLKTTVIPPSSSTTILPCPSSASFSNSFSTS
LARTRSRLQRLSSPGAKTDSFKRLSYLFSRSKRKAPPMPLPLQSPPSYTISDGLLRPLGS
HSHSDFGLSGVTRSETHLNEVGRSADIINPSFSPRRTNGRDSLLTLPLPPPCPCQSLHCA
SNMSESSSRLLDSSEDVFQGGGVGGAGEGGVGRGGGGGRGMMMGGWVGPCDDVIEDSCEV
IEDSVTTQL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgacacagctgtactacaagaaggcaacgttttcgccgtaccgcgaccgc
atcccgctgcagatcgtccgggcggaggtggagctgtctgcagaggagagagcctacctc
actgcagtggagaaaggtgactatgcgggtgtcaaacacgcccttcgcgaggcggaggtc
tactacaacatggacgtgaactgtctggacccgctgggccgcagcgcgctcctcatcgcc
atcgagaacgagaacctggagatcatggagctcctgctggaccacggcatccacacggga
gacgctctgctctacgccatcaggaaggaggtggtgggcgccgtggagctgctgctgtct
caccggaggcccatcggcgagaaacaggttcccgcgctgatgatggacattcagttttca
gagttcaccccagacataactcccatcatgctcgctgcccacaccaacaactatgagatc
atcaagctgctcgtccagcggaaggtcaccattcccagaccacaccagataagatgtgac
tgtgttgagtgtgtatccagttcagaggtcgacagccttcgacattcacggtctcgactc
aacatctacaaagctttggcctcgccctcactcatcgcactgtccagtgaagatcccatc
ctcactgccttcagattgggctgggaactcaaagaactcagcaaggtggagaatgagttt
cgtcaggagtatgaggagctatcacaacagtgcaaactttttgccaaggacctcctggat
caggccaggagttcaagagagctggagaccatcctgaaccacagagacaacgaccagagt
gaggaactggacccgagacagtgccatgacctcgcaaagctcaaactcgccatcaaatat
caccaaaaagagtttgtggcgcagccgaactgccagcagctactcgccacgctgtggtat
aacggcttcccgggctggaggagacgacactgggccgtcaaactggtcacctgcttcatc
atcggactcctgtttcctgtcttctcactgatctacctgttggctccgaagagcgcgctg
ggtcgtttcataaagaagcccttcatcaagttcatctgtcacacagcgtcctacctgacc
ttcctcttcctcctgctgctggcctcgcagcacatcgcccggaccaacctccacatgcag
ggacccccacccaccatcgtggagtggatgattctcccgtgggtgctgggcttcatctgg
gcagagattaaggagatgtgggacggtggattcacagagtacatccacgactggtggaat
ctgatggacttcgccatgaactcgctctacttggccaccatatcgctgaagatagtggcc
tacgttaagtacaactcctctcgtcccagggaggagtgggagatgtggcacccgacgctg
atagccgaggctctgttcgccatcgccaacatcttcagctcgctcagactcatctcgctc
ttcaccgccaactcacacctcgggccactgcagatctcgctgggacggatgctgctggac
atcctcaagtttctcttcatttactgtctggtcctgctggcgtttgcaaacggtctgaac
cagctgtatttctactatgagacccaagcttcagaggagcccaacaactgcaagggaatc
cgctgtgagaggcagaacaatgccttctcaacgttatttgagactctccagtctctcttc
tggtccatatttggtttgttaaacctttacgtcaccaacgtgaaggcccggcacgagttc
acagagtacgtcggggcgaccatgttcgggacgtacaacgtcatctcgctggtggttctg
ctcaacatgctgatcgccatgatgaacaactcctaccaactcatcgctgaccacgccgac
atcgagtggaagttcgcccgcaccaagctgtggatgagttactttgacgaaggcgggacg
ctgccgcctccgttcaacatcatccccagccccaagtccatctggtacctgctcatgtgg
ctccacaacaagctgtgcacgagaggccagccgcccggggaggacacgcacaaatgtgaa
aacctccgagagttcacggaacgtcacgctgacagtctgatacaaaatcagcattaccag
gaagtcatccggagcctggtgaagaggtacgtggcggccatgatacgcagcgccaagacg
gacgagggactgacagaggagaacttcaaggagttgaagcaggacatctccagtttccgc
tacgaggtcatggatctccttggtaaccggcgtcctccccggcgacactactcctcctcc
agcgagacgatgagagacgacggcggcatgatctcggaggacgacagcgaatcgggcgac
ggcggaggcgggtgccggaagtcgaagggcgtgagcttcatgactccgctggaggacgac
tccaggtcgacgctcggcgtgtccgctctggttcgctccatttctggaatgtcgcagaga
ggagaggatgaggagggggagatggaggaagggatcggatgggggcaggtggaggaggag
gaggaggaggggaaaccaaagagcaacgggctgaagacgaccgtcatccctccgtcgtct
tccaccaccatcctcccgtgcccgtcttcggcatcgttctccaattcgttctccacgtcg
ctcgctcgcacgcggagccgtctgcagcgcctctcctctccgggagcaaagacggactct
ttcaagcgcctctcctacctgttctcacgctccaaacgcaaagcccctcccatgcctctc
cccctccagtccccgccctcctacaccatctccgacgggttgctccgccccctggggagc
cacagccactccgacttcggactcagcggcgtgaccagaagcgagactcatctgaacgag
gtgggccgctcggccgacatcattaacccctcgttctcgccgcggagaacgaatgggcgg
gactcgctcctcacgcttcccctcccgcccccgtgcccctgccaatccctgcactgtgct
tccaacatgtccgagtccagttcgcgcctcctggactccagcgaggacgttttccagggc
ggaggcgtgggaggagctggcgagggcggcgtgggccgaggaggaggaggaggcaggggg
atgatgatgggcgggtgggtgggaccctgcgatgatgtcatagaggacagctgtgaggtc
atagaggactcagtcaccacgcagctatag
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