KEGG   Scomber scombrus (Atlantic mackerel): 134006140
Entry
134006140         CDS       T10651                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, E-S beta chain-like
  KO
K06752  MHC class II antigen
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04145  Phagosome
ssco04514  Cell adhesion molecules
ssco04672  Intestinal immune network for IgA production
ssco05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    134006140
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    134006140
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    134006140
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    134006140
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    134006140
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   134006140
  Exosomal proteins of epithelial cells
   134006140
  Exosomal proteins of breast milk
   134006140
SSDB
Motif
Pfam: C1-set MHC_II_beta C2-set_2 C2-set_3
Other DBs
NCBI-GeneID: 134006140
NCBI-ProteinID: XP_062301213
LinkDB
Position
23:96250..101751
AA seq 249 aa
MASSFLSFSLLFITVYTADGFRTYEVDRCQFNTSKLEDVRYIRSTYYNKMEFSKFDSSVG
KFVGYTEYGVKQADYWNNDASILAQMKTARERYCLNNVQIWSNNPLTKSVKPYVRLYSVA
PPAGKHPSMLVCSIYSFYPKTIIVKWLRDGQEVTSDVTSTEEMADADWYYQIHSHLEYTP
RSGEKISCKVEHASLREPLITDWDPSLPESERNKIAIGASGLILGLILSLAGFIYYKRKS
RGRILVPSN
NT seq 750 nt   +upstreamnt  +downstreamnt
atggcttcatcctttctgagcttctccctcctcttcatcactgtctacacagcagatgga
tttaggacttatgaggtggatcgctgtcagtttaacacctctaagctggaggacgtcagg
tacattaggtctacgtattacaacaagatggagttcagcaagtttgacagcagtgtggga
aagtttgtcggctacactgagtacggagtgaagcaggcagactactggaacaacgatgct
tcaatcctggctcagatgaaaactgcgagggagagatactgcctaaacaacgttcagatc
tggtccaacaatcctttgactaaatcagtgaagccgtacgtgcggctgtactcagtggct
ccccctgctggtaaacatccctccatgttggtctgcagcatctacagcttctaccccaaa
acgatcatagtgaaatggctcagagacggacaggaagtcacctctgatgtcacttccact
gaggagatggcagacgctgattggtactaccagatccactcccacctggagtacacgccc
aggtctggagagaagatctcctgcaaggtggaacacgccagcctgagagagcctctgatt
actgactgggatccgtccctgcctgagtcagagagaaacaagatcgccatcggagcgtca
ggactgatcctgggtctgatcttatctctggctggattcatctactacaagaggaagtcc
agaggacggattctggtcccctctaactga

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