Syngnathus scovelli (Gulf pipefish): 125967570
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Entry
125967570 CDS
T08785
Symbol
fbn1
Name
(RefSeq) fibrillin-1
KO
K06825
fibrillin 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04350
TGF-beta signaling pathway
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
125967570 (fbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125967570 (fbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125967570 (fbn1)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125967570 (fbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
hEGF
EGF
FXa_inhibition
TB
EGF_3
Plasmod_Pvs28
Fibrillin_U_N
EGF_FBN_1st
Motif
Other DBs
NCBI-GeneID:
125967570
NCBI-ProteinID:
XP_049574715
LinkDB
All DBs
Position
4:complement(12618825..12667195)
Genome browser
AA seq
2900 aa
AA seq
DB search
MQNTKSGGGRLLQLVLVAQLSLCILLGDAAEVLDTGEVRTTDSRNGRAKRRGGTDVLRGP
NVCGSRNNVYCCPGWKTLIGGNQCIVPICRSSCGDGFCSRPNMCTCPTGQVATSCGSKSV
QHCNIRCMNGGTCAEDNCICQKGYVGNHCGQPVCENGCLNGGRCVAPNRCVCTYGFTGAQ
CEKDYRTGPCFASVNKQMCQGQLSGIVCTKTLCCATVGRAWGHPCEMCPAQPHPCRRGFI
PNHRTGACQDVDECQAIPGICEGGNCINTVGSFECKCPAGHRFNEISQKCDDLDECSNIP
GVCGVGECSNTAGSYFCKCPQGYYVSVDGSRCIDGRGGFCFASLLNGRCASQNSQLLTKM
QCCCDSGRCWSDGSTPEICPIRGAEEYQKLCIQLPDINGGGIIPGRGPGGPDFPGIYPQI
PGRTPGQGPGPGPGTGPGTGPGQYPNPGQGEFPGNLPIQPPPGPFIIQTQNVTNICQAYR
NLCPNGRCIPLPGVNYRCECNMGFTLDTRNVCVDEDECERSPCVHGECVNTPGSYMCRCP
VGFQSTATKTECRDLDECVANGRICNNGRCVNTEGSFHCVCNAGFEISTDGKNCQDQDEC
LIRNMCLNGLCINEDGSFKCICKPGYLLDTSGRMCIDIDECETPGMCMNGHCVNTEGSFR
CECMSGMAVGLDGRVCVDTHMRSSCYGGYKRGQCVRPLFGAVTKSECCCASIEYAYGEPC
QPCPPQNSAEFLALCPNSIGTTGDGRDINECALDPDVCQNGVCENMLRTYKCNCNEGFEV
DLTGKNCVDIDECLMNSLLCDNGLCRNTPGSFTCQCPKGFTFNPENDICEDVDECVSSPC
VNADCVNSKGSFVCLCSTGSSLDSSGLECIETTKSTCWLKMVNDVCEVNINGATLKSHCC
ATLGVAWNSPCAKCEKDPICGKGLARVRGNVCEDVDECQVFPGVCINGKCVNTHGSFFCQ
CPPGMTVDLSGRTCIDLRTEQCYLKHEDERCGAPITGKHRVDACCCSVGVAWGPECDECP
EKGTPQYTQLCPRGPGFSHRGDFINGRPFLKDINECRMINSICSNGKCRNTIGSFRCRCD
NGYALDSDERNCTDIDECRISPDLCGQGRCVNTPGDFECECFEGYESGFMMMKNCMDIDE
CERNPLLCRGGECVNNEGSFQCVCPEGHEIAPDGSACLDINECELSDKLCRHGKCVNMIG
RYQCVCDTGYKSTENRLDCVDIDECTIENGGCENFCTNSEGSYECSCHNGYALMPDLRSC
TDIDECEESPDICDGGQCTNTPGTYQCLCFDGFMSSEDMKTCLDVDECELNPNICLSGNC
ENTKGSFICHCDLGYSVRKGTTGCTDINECEIGAHNCDRHATCTNTAGSFKCNCASGWIG
DGLKCTDLDECSNGTHLCSNNAECLNTMGSYRCACKDGFSGDGFHCSDSDECAENGNLCE
SGHCLNMPGGYRCECDMGFIPTADGKACEDIDECTFADICVNGRCKNIPGLFRCECNIGY
ELDRSGGNCTDINECADPTICINGICVNTPGNYICNCPTDFELNPTRVGCVDTRSGSCYL
DVRPRGDSSESLDCSNEIGVGVSKASCCCSLGHAWGNPCELCPALNSTEYKTLCPGGEGF
RPNPITVILEDINECQELPGLCQGGKCINTFGSFQCECPRGFALNPETRICDDINECERP
GICGPGQCYNTIGNYTCICPVDYMQVNGGNNCMDMRKSYCYRNFYSDNRTCDGELTFNMT
KKKCCCAYNIGRAWNKPCEQCPVPSSDEFAILCGSERPGYYIDITTGRVIDIDECREIPG
VCENGVCINRIGSFRCECPIGFIYNDKLLICEDIDECQNGPVCQQNAACLNVPGSYRCEC
RPGFRFSSTGQCLDRNECVENPGVCSPGQCIDTRGSFRCICPNGFKTTQDQSMCVDTDEC
EQQPCGNGTCKNTVGSYNCLCYPGFQNSHNSECIDIDECSSQRGLCRNGQCVNTVGNFQC
VCNDGYELTLDGRQCVDINECVVNPGTCGVGTCLNLDGSYRCICPPGYFLHEETCEDIDE
CSQSPEICQFGTCSNTEGSFTCLCPEGFQLSASGRRCLDVRINYCYTRFENGQCQVPKPQ
NTTKEECCCTGMPGQGWGDPCEICPGETEEAFPLLCKNKGYQRGVDEVQKDIDECINNPC
ENGQCINTDGSFRCECQMGYHLDITAFRFTCVDIDECEIGNPCGNGTCTNVIGGFECACE
EGFEPGPMMACEDINECAQNPLLCAFRCVNVVGSYECKCPTGYVLREDRRMCKDQNECED
GLDDCASRGMTCKNLIGTFMCICAPGYTRHPGGDGCIDLNECTAKPGICKNGRCENTVGS
YRCKCDQGFTANPTQTECIDNREGFCFTEVLTTLCQMTSSNRNKVTKSECCCDGGRGWGD
NCELCPLPGTTHFKKMCPLGHGFTTDGRDIDECRVMGNLCKHGQCVNTLGSYNCVCKPGY
TTDITGTQCMDVDECIQAPKPCNFICKNTEGGYLCSCPRGYILQEDGKSCRDLDECSTKQ
HNCQFLCVNTIGAFTCKCPPGFTQHHTACIDNNECSTDPNLCGANGVCQNTPGSFNCDCQ
RGFSLDPNGQSCEDTDECDGNHRCQHGCQNLVGGYRCSCPQGYLQHYQWNQCVDENECQN
SQICGGASCHNTLGSFRCLCPTGFNYEQTSGGCSDINECSNTQNPCKFGCSNTDGGYLCG
CPTGYYRAGQGHCVTGLAFGGADQSAGQGEEDDENSLSPEACYECKINGYPKKGRQRRST
NSTQGEPGDDMQMSDNEMISLASMDVEDTLHLHLNISDLSNRDRILEFTPALSALTDHVR
YSIDYGNEAGYFKINQREGVSYLHLNKKKGLALGAYDLQISSIPLYRKEELTELEDRHDK
DYLSGQLGDILKMRVQIILH
NT seq
8703 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacactaagagcggaggaggaaggctcctgcagctggttctggtggcccagctg
tccctctgcatcctgctcggagacgccgcagaggttctggacaccggcgaggtcagaacc
accgactccagaaacggcagagccaaaaggaggggagggacggacgtgctcagaggaccc
aacgtgtgtggttcaaggaacaatgtttattgctgcccaggatggaagactctgattggg
gggaaccagtgcattgtccccatatgtcgcagcagttgcggagatgggttctgctccaga
ccaaacatgtgcacctgccccaccggccaagtcgccacgtcctgtggatccaaatcagtt
cagcactgtaacattcgatgcatgaacggggggacttgtgctgaggacaactgcatctgt
cagaaaggctatgtgggaaaccattgtggtcaaccggtatgtgaaaatggctgccttaat
ggaggaagatgtgtggctcccaatagatgtgtgtgtacctacggcttcaccggggcacag
tgcgagaaagactatcggaccggtccatgcttcgcctcagtgaacaaacagatgtgtcaa
ggccagcttagcggtattgtgtgcacaaagactctgtgctgtgccacagtgggacgggca
tggggtcacccgtgtgaaatgtgcccggcccagcctcacccatgccggagaggcttcata
ccaaaccaccgcacaggagcatgccaagatgtagacgaatgtcaggcgatccctggcatc
tgtgagggtggaaactgcatcaacacagtgggatccttcgaatgtaaatgtcccgctggg
cacagattcaatgagatctcacagaaatgtgatgatcttgatgaatgttccaacattcct
ggtgtctgtggcgttggcgaatgctcaaacactgcaggcagttacttctgcaagtgtcca
cagggatactacgtctccgtggatggctccaggtgcatagatggtcgtggtggtttctgt
tttgccagcctgctgaatgggcgctgtgccagccaaaattcacagctgttgaccaaaatg
cagtgctgctgtgatagcgggcgatgctggtccgatggctccactccagaaatctgcccc
attcgcggagcagaagagtaccagaaactgtgcatccagttacccgatattaatggtggg
ggaattatacctgggcgtggtccggggggccccgacttcccgggcatctaccctcagatt
ccgggccgtactcctggtcagggcccaggacccgggccaggaacaggcccgggcacaggc
ccaggtcaatacccaaatccaggtcaaggcgagtttccaggaaatctaccaatacagcct
cctccaggtcctttcatcatccaaacccagaatgtcaccaacatttgccaggcctatcgc
aacctctgcccaaatggacgatgcatccccctgccgggcgttaattaccgttgtgagtgc
aacatgggcttcacactggacacgaggaacgtgtgtgtcgatgaggatgaatgtgagaga
agcccttgcgtgcacggcgagtgtgtgaacactcccgggtcctacatgtgtcgatgtccc
gtgggattccagtccactgcaaccaagacagagtgcagagacttggatgagtgtgtcgcc
aatggccgtatctgcaacaacggtcgctgcgtgaacacagaaggcagcttccactgtgtg
tgcaatgctggctttgagatttcaactgatggcaaaaactgtcaagatcaagacgagtgc
ctcatccgaaacatgtgtctgaatggactgtgcatcaatgaggatggcagctttaaatgc
atctgtaaacccggctacttactcgataccagtgggcgcatgtgtatagatattgatgag
tgtgagactccaggtatgtgtatgaacggccactgcgttaacacggagggatcattccgc
tgtgaatgcatgtcaggcatggcggttggcctggatggacgcgtctgtgtcgacacacac
atgcgcagctcatgttatggcggttacaagcgaggtcaatgtgttcggcctttatttgga
gctgtgaccaaatccgagtgctgctgtgccagcatcgagtacgcctacggggagccctgc
cagccctgcccaccacaaaactctgccgagttcctggcgttatgtccaaatagcattggc
acaactggagatgggagagatattaacgagtgtgccctcgacccggatgtgtgccagaat
ggcgtgtgtgagaacatgctgagaacatacaaatgcaactgcaatgaaggctttgaggtc
gacctgacgggcaaaaactgtgtcgatattgacgaatgtctgatgaacagtctattgtgc
gataacggcctgtgcaggaacacacctggaagtttcacctgtcagtgtcccaaaggattc
accttcaatccggaaaacgatatctgcgaagatgtagatgaatgcgtgtccagtccctgt
gtgaacgcagactgcgtgaacagcaaagggtcatttgtatgcttgtgttcaacgggcagt
tcactggacagctctggccttgaatgtattgagacaactaaaagcacttgctggctgaaa
atggtaaatgatgtctgtgaagtcaacatcaacggggcgacactcaagtctcactgctgc
gccacactaggagtggcctggaacagcccttgtgccaaatgtgaaaaagatcccatctgc
ggtaagggccttgctcgggtccgaggaaatgtgtgcgaagatgtggatgagtgtcaagtt
tttcctggagtgtgtatcaatggcaaatgtgtcaacacacatggttcctttttctgtcaa
tgccctcccgggatgactgttgatctcagcgggagaacctgcattgacttgcgcacagag
cagtgctacctaaaacacgaggatgaacgttgcggagctcctatcacaggaaaacatcgc
gtggatgcttgttgttgctcagtgggagtagcctggggtccagagtgcgacgagtgtcct
gagaaaggtaccccgcaatacactcagctctgccctcgtggaccaggcttctcccaccgt
ggtgacttcatcaatggaagacccttcctcaaagatatcaacgaatgcaggatgataaac
tcaatttgctcaaatgggaaatgccgaaacaccatcggaagcttccgttgtcgttgtgat
aacggatacgcgttggattcagatgagcgaaattgcaccgacattgacgagtgccgcatc
tcccctgacttgtgcggacaggggcggtgtgtcaatactccaggagactttgagtgcgag
tgttttgaaggatatgagagcggcttcatgatgatgaaaaactgcatggacatcgatgag
tgtgaacgcaatcctctgctatgtcggggaggcgagtgtgtcaacaacgaagggagcttc
cagtgcgtgtgccccgagggacacgagatcgctcccgacggctcggcctgtctagacatc
aatgaatgcgagctgagcgacaagctgtgcagacacggcaagtgtgtcaacatgattgga
cgctatcagtgcgtctgtgacacaggttacaaatcgacggagaacaggctggactgtgtg
gacatcgacgaatgcaccattgagaacggagggtgtgaaaacttttgcacaaactcagaa
ggcagttatgagtgcagctgccataatggatacgctctaatgcctgatctgagaagctgc
acagatattgatgagtgtgaggagagccctgacatatgtgatggaggccagtgtaccaac
acgccggggacataccagtgtctctgcttcgatggctttatgtcatctgaggacatgaag
acctgccttgatgtggacgagtgtgagctcaaccccaacatctgcctgagtgggaactgt
gagaacacaaagggatccttcatctgtcactgtgatctgggatactctgtccgcaaagga
acgacaggctgcacagatatcaatgagtgcgaaattggagctcacaattgtgaccgacac
gcaacatgcaccaatacagcagggagcttcaaatgcaactgtgcttctgggtggatcggc
gatggccttaaatgcacagacctggatgaatgctccaatgggacccacttgtgcagcaac
aacgccgaatgtctcaacaccatgggctcgtatcggtgtgcatgcaaagatggattttct
ggagatggcttccattgctcagacagtgatgagtgcgcagagaatggtaacctgtgtgag
agtggccactgcctgaacatgcccggcggctatcgctgtgaatgtgacatgggcttcatc
cccaccgctgacggcaaagcttgtgaggacattgacgaatgtaccttcgctgacatctgt
gtcaatggacgctgcaagaacattccaggcctttttagatgtgaatgtaatattggttat
gaactggacaggagtggaggcaactgcacagatatcaatgaatgtgcagacccaaccatt
tgcattaatgggatttgtgttaacacccccggaaactacatttgtaactgccccaccgat
tttgagcttaaccccacccgggtgggatgcgtagacactcgctctggaagctgctacctg
gatgtgcggcccagaggagactcatctgagagcttggactgttccaatgagattggagtt
ggtgtttctaaagcatcttgttgctgttctctgggccatgcttggggcaacccgtgcgaa
ttatgcccagctctcaactccaccgagtataagaccctgtgcccaggtggcgaaggcttc
agaccgaaccccatcactgtcatcttggaagatataaatgagtgtcaggaattgccgggc
ttgtgtcagggaggaaagtgcatcaacacctttgggagctttcagtgtgaatgtccgaga
ggttttgcgctcaacccagagaccagaatctgtgacgatatcaacgagtgtgagcgtcca
ggtatttgcgggcccggccagtgttacaacaccatcggaaactacacttgcatctgcccc
gtggactacatgcaagtcaatggaggcaacaattgcatggatatgaggaagagctactgc
tacaggaacttttattccgacaacagaacatgtgatggagagctaacattcaacatgacc
aaaaagaagtgctgctgtgcctataacattggtcgtgcgtggaataaaccctgtgagcag
tgtcctgtacccagcagcgatgagtttgccatcctgtgcggcagcgagagaccaggatat
tatatcgacatcacgactggaagagttattgacattgatgaatgcagggaaatcccaggc
gtgtgtgagaatggagtatgcatcaacaggatcggtagcttcaggtgcgagtgtcccatt
ggcttcatctacaatgacaagctactgatttgtgaagatatcgatgagtgtcagaatgga
cccgtgtgccagcagaatgcagcctgcttaaatgtgcctgggagctaccgatgcgagtgc
agacctggatttcgcttcagctcgacgggacaatgcctagatcgtaacgaatgtgtcgag
aaccccggtgtttgcagtcctggtcagtgcattgacacgcgagggagcttccgctgcatc
tgccccaatggattcaaaacaacgcaggaccagtcaatgtgtgttgacacggacgagtgc
gagcaacaaccatgtggcaacgggacctgtaagaacaccgtgggctcatacaactgcctc
tgctaccccggattccagaattcacataacagtgaatgtatagacattgatgagtgctcg
agccagagaggactctgtcgtaacgggcagtgcgtgaacactgtgggcaacttccagtgt
gtgtgcaacgatggctatgaacttactcttgatggaagacagtgtgtagatattaatgaa
tgcgtagtaaatcctggcacatgcggcgttggcacctgtttgaatctggatggctcgtac
agatgcatttgcccgcctggatattttctccatgaagaaacttgtgaagacattgacgag
tgttcgcagtcacccgagatctgtcagtttggaacctgctccaacacggagggaagcttc
acctgcttatgccctgagggcttccaactgtctgcctcgggacgcagatgtttagatgta
cgcatcaactactgctatacacggttcgaaaatggacaatgtcaggttccaaagccgcag
aatactaccaaggaagaatgctgctgcaccggaatgccaggtcaaggctggggagatcct
tgtgaaatttgccctggcgagaccgaggaggcgtttccccttctctgtaaaaataaggga
taccaacgtggggtcgatgaggttcagaaagatatcgatgaatgcatcaataacccctgt
gaaaacggccagtgcatcaacacagatggctctttccgctgtgaatgtcaaatgggctac
cacctcgacatcaccgcattcagatttacttgcgtagacattgatgagtgcgaaattggt
aacccctgcggaaacggcacgtgcacaaatgtgatcggaggctttgagtgtgcatgtgag
gaaggctttgagcctggtcccatgatggcctgcgaagacatcaacgagtgtgcccagaat
cctctgctgtgtgcattccgctgcgttaatgtagtgggctcctatgagtgtaaatgtcca
acaggatacgtgctgcgtgaagataggaggatgtgtaaagaccagaatgaatgtgaagat
ggcctggatgattgtgctagcagaggaatgacctgcaagaaccttatcggtacatttatg
tgtatctgcgctcctggatacacacgccatccaggtggagatggctgcatcgatctaaac
gaatgtacagccaaaccgggcatctgtaagaatggtcgttgtgagaacacagtaggaagc
tatcgttgcaaatgtgaccagggatttacagcaaaccccacacagaccgaatgtatcgat
aaccgcgagggcttctgtttcactgaggttctgaccactctgtgtcagatgacatccagt
aacagaaacaaggtgaccaagtcggagtgttgctgtgatgggggcaggggctggggtgac
aactgtgagctttgtccactccctgggaccacccacttcaagaaaatgtgtcctctggga
catggattcaccacggatggcagagatattgacgagtgtcgtgtgatggggaacttatgc
aagcacggccagtgcgtcaacactctaggctcgtacaactgcgtctgcaaacccggctac
accacagacatcactggcactcagtgcatggatgtggatgagtgcatacaggcaccaaag
ccttgtaacttcatttgtaagaacacagagggtggatatctttgttcctgtccccgtgga
tacatcctacaggaagatggaaagagctgcagagacttggatgaatgctcgacaaaacaa
cacaactgtcaattcttgtgtgtcaacactatcggcgcattcacctgcaagtgtcctcct
ggctttacccagcatcacaccgcctgcatcgacaacaacgaatgctcaacagacccgaat
ctttgtggcgccaatggtgtttgccagaacactccggggagcttcaattgcgactgccag
cgaggattctcattagaccccaatggacagagctgtgaagacactgacgagtgtgacggt
aatcacaggtgtcagcatggctgtcagaacttagtaggcgggtaccgctgcagctgtcca
caaggttacctgcagcactaccagtggaaccagtgtgtggatgagaacgagtgtcagaac
agtcaaatctgcgggggagcatcgtgccacaacactctgggaagcttccgctgcctctgc
cctaccgggtttaactacgaacagacctccgggggctgctcagacatcaacgagtgctcc
aacacccagaacccctgcaagtttggatgctccaacacagacgggggctacctctgcggt
tgtcccactggctactacagggccggacaagggcactgtgtcacagggttggcttttggt
ggtgctgaccaaagtgctggtcagggagaggaggacgatgagaattccctgtctcccgag
gcctgctatgagtgcaagatcaacggctatcccaagaaagggcgccaacgacgtagtact
aattcaacacagggtgaacccggggatgacatgcagatgtctgacaacgagatgatcagt
ctggccagtatggacgtcgaggacacgctgcacctccacctaaacatcagtgacctgagc
aaccgtgaccgcattcttgaattcactccggctttgtccgccctcaccgaccatgtgcgc
tacagcatcgactatggaaacgaggcaggctacttcaagatcaaccagagggagggcgta
agctacctgcatctgaacaagaagaagggtctcgctctgggcgcgtacgacctgcagatc
agtagcatcccgctgtacaggaaggaggagctgactgagctggaggaccgacatgataaa
gactacctctcagggcagctgggggacatcctgaagatgagggtgcagatcatcctgcat
taa
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