Syngnathus scovelli (Gulf pipefish): 125967610
Help
Entry
125967610 CDS
T08785
Symbol
nod2
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 2
KO
K10165
nucleotide-binding oligomerization domain-containing protein 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125967610 (nod2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sscv04054
]
125967610 (nod2)
Pattern recognition receptors [BR:
sscv04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125967610 (nod2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
CARD
LRR_6
NLRC4_HD2
WHD_NOD2
LRR_4
AAA_16
nSTAND_NTPase5
AAA_29
AAA_22
Viral_helicase1
AAA_25
AAA_30
T2SSE
nSTAND3
AAA_18
Motif
Other DBs
NCBI-GeneID:
125967610
NCBI-ProteinID:
XP_049574782
LinkDB
All DBs
Position
4:complement(19978911..19983469)
Genome browser
AA seq
955 aa
AA seq
DB search
MAQDLVLKQRSEILCGLCSSGSSEPLERVLDVLLARGEFSWEDYLNVRVQGRPLHANARY
LLDLVYAKGEAACQALTEAIRQVRPESPGLVTGTLLTQRPGLVEELQGCVDGALEVLLES
GCFTHEDCGDVRLPLHTPAQQARRLLDHVSSKGESAANVVLRYVEQKQQQGCNLTAEKTT
PKELLIYQKKLRSSVSAQSVFLSTYGGTDHMSLDDIYTQGQLELAYDCKDQTHLDLEDIV
GPPGTTNEEADTVLVSGDAGSGKSTLLQRLHLLWARGTSLPEFVLLFPFSCRKLNSELNE
LSVQELLFRHCCWPDRNQDEIFRFILDHPHLVVITFDGLDELKQSFSDERRICCPTQPAP
VHELLFNLLQGSLLKGVRKVVTSRPEAVGSTLRKHLRKELFLKGFSPDGINCFVKKQHSD
LSVASKVLASIQANTALLGLCHSPVLCWIVSQCHKELLGCGDGTPQTITDVYLMILQHFL
QHQSPSKSSASTSWIQEHLVGILHLGQLAFQGVEASCFVFDGADLETCCVTDKEICAGFL
TQSKEMSHHQSLRYEFLHVTMQCFFAALYIVLSNNADRSTIAKLFELKAAGFSSSCFGPC
LSPDLQQGLSESPNLQIAATFVSGLLSQRHRHLWLHCTTTSTVERKARQVVRCLHKGMQK
HFKSIPQPVEGEKKSMHAMPGFVWLIKCIYEMRESNMAREVLSKLEVDHLKMTYCNIGPV
ECTALAYVLQHLRNPVGIELDNNSVGDVGVEQLLPCLHICKSLYLRNNNITDEGLRKLMA
KGIQCDNFQKIALFNNRLTDACTQHIFHLLKTKQNFLSLRLGNNNITSEGAKLLAKGLEL
NHSLKHLGLWGNKIGDSGAEAIAGALEGSKTLVWLSLVGNGVGSAGARALATMLESGTSL
EELWLTENCITREGVECLVQAMECNTCIKSVWLRNNPLSPEEVEEMTQRESRLIF
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggatctggtgctaaagcaacgtagcgagatcctctgcggtctgtgctccagc
ggctcgtccgagcctctcgagagggttctggatgtcctcctggcccgcggggagttttcg
tgggaggattacctcaacgtgcgagtgcaggggaggccgcttcatgccaacgccaggtat
ctcctggatctggtctacgccaagggggaggcagcgtgccaggccttgaccgaggctatc
cggcaggtccggcccgaatctccaggtcttgtcactgggacgcttctgacgcaaagaccc
ggcctggtggaagagctccaaggctgtgtggacggagctctggaagttcttctggaatca
ggatgcttcacccacgaggactgtggagacgtacgcttgcctttgcacacacccgcgcag
caggccagacgcttgctggatcatgtgagctccaaaggtgagtcggcggctaacgtggtg
ctacgctacgttgagcaaaagcaacagcaggggtgcaacctgacagcggagaagaccaca
cccaaagaactccttatctatcagaaaaagttgcgcagttctgtgtcggcccagtccgtc
ttcctcagcacgtacggaggaaccgaccacatgtcgcttgatgacatctacacccaaggt
caactggagctggcgtacgactgcaaggatcaaacacatctggacttggaggatatcgta
ggaccgccaggcactacgaatgaggaggcggatacggtcctggtatccggggatgcgggt
agcggtaagagcaccttactccaaaggctgcatcttctctgggctcgaggcaccagcctc
cccgagttcgtcctcctgttccctttcagctgtcggaagctcaattcggaactcaatgag
ctgtcagtccaagaactgctcttccgccattgctgctggcccgaccgcaaccaggatgag
atcttccgcttcatcctggaccacccccacctcgtggtcatcacgtttgatggcctcgat
gagctcaagcagagcttctcggatgagcgcagaatctgctgccccacacagcccgccccc
gtacacgaactattattcaacttactccaggggtccctcctgaagggggttcggaaggtg
gtgaccagtcgtccggaagctgtgggttcgacgttgaggaagcatctgcgcaaagaactc
ttccttaaaggcttttcccccgatgggatcaattgttttgtcaagaaacaacacagcgac
ttgtcggtggcctcgaaagtcttggcgtccattcaggccaacacggctttattgggactc
tgccacagtcccgtcctctgctggattgtctcgcagtgtcacaaggagctgctaggttgc
ggagatgggacaccgcagaccataacggacgtgtacctcatgatcctgcagcattttttg
cagcaccaaagcccctccaagtcttccgcgagcaccagttggattcaggagcacctggtc
ggcatcttgcatctgggtcagcttgctttccagggcgtggaagcttcctgttttgtcttc
gatggcgctgacctggagacctgctgtgttacggacaaagaaatctgtgcggggttccta
acccaaagcaaggaaatgtcacatcaccagagtcttcggtacgaattccttcacgtgacc
atgcagtgtttctttgccgcgctttacatcgttttgtccaacaacgcggaccgctccact
atcgctaagctattcgagctaaaggcagcaggcttcagtagctcctgctttggcccctgc
ttgtctccggaccttcaacagggactgtccgaaagccccaatttacaaatcgcggccact
tttgtgtccggtctcctatctcagagacacagacacctgtggttgcactgcaccacgaca
tccaccgtggagaggaaagcgcgacaggtggtccgctgcctccacaaaggcatgcagaag
cacttcaagtccatcccccagccagttgaaggggaaaaaaagagcatgcacgccatgccg
ggtttcgtctggctcatcaagtgcatctatgagatgcgggagagcaatatggcccgggag
gtcttgagcaagctggaggtggaccacctgaagatgacctactgcaacatcggaccggtg
gagtgcaccgctctggcatacgtgctccagcacctgaggaatcccgtgggaatcgagctg
gacaacaactcggtgggcgacgtgggcgtggagcagctgcttccctgtttgcatatttgc
aagtccctctatctcagaaataataacatcaccgacgaggggcttcgaaaactgatggca
aagggaattcagtgtgacaacttccagaaaattgcactcttcaacaacaggctgactgac
gcttgtacgcaacacatttttcatctactgaagaccaagcagaattttctttcattgagg
ctgggcaacaacaatatcacatcggaaggagccaaactactagctaaagggctggagctc
aatcattcgttgaagcatttagggctttggggtaataagattggcgattctggtgcagag
gccattgccggtgccctggaaggcagcaaaacgctagtgtggctaagcttggtggggaac
ggtgtaggcagtgccggagctcgtgctttggccacaatgcttgagagtggcacatcactg
gaggaattatggttgactgaaaactgcatcaccagggagggagtggagtgtttggttcaa
gccatggagtgtaacacatgtatcaagtcagtatggttaaggaacaatcccctaagccct
gaggaggtggaggagatgactcaacgtgaatcaagactcatcttctga
DBGET
integrated database retrieval system
