Syngnathus scovelli (Gulf pipefish): 125968711
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Entry
125968711 CDS
T08785
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b isoform X1
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125968711 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125968711 (smcr8b)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
125968711 (smcr8b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
125968711
NCBI-ProteinID:
XP_049576008
LinkDB
All DBs
Position
5:855990..859281
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AA seq
750 aa
AA seq
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MISSPDLLPFTGPEGFGDSEDGEAEGERGTARGLLPEELSIPPLPSDASGGGHPWSSAAG
FHRDFVLVAEFSEEVGPTPVMTIPDEAGASGSLDLNHFSVRIMSVDYQASGPGGPSSSSS
SGLRLNFNEDSEVVLGDSADWVFAYVRHMTLLDLSARGMVRPFCMAYVCSSQAKIMDNFG
RLSAGFGLAADSLKTGNRQTFSLELHRKLHQLQYKRLALLQDDSMSGAGEQLEAVERAIA
THKDLLRQVTSYPNRKLKQPDFLPYEPADVSTDATSIPPPPPPAAHLAGPEGRLKPLQEL
CSTYFLSLMTEQLAQAEVRLRGDVTALRSAGITRALNRKLRLTNFLFEQPEDDEEEEEED
GEEAVARETGSWPSSESSVEAKEEEMTGSTSSGDSIQVIGTERSYKTLASSAAPVTSSLL
PGSSDPAPIAVPLATPLPSLDSSLVAVSDPGPRRLRVYVGRTNSEDSIEVLSTTESIIAE
DLAAISEEEEPIKDDKTDVTAKDARAGSAYQMLPNLPAEPWSWPQSVDEASDGGAETHAP
HRTLSSDEAGLRAQRFVKQNSFSRQVVFCLLSGRPLVLLSGDGDKLRKTVDALALFLPAP
AGAVMPCLSAPLQLSDLLTWRLIGFHRSPSSGPLHWLSRYSRYLAVLDLDQRTLRCQRYS
GSLAGSLVGSAVPAGAFLLHVQSGLTALANRALLFTFARRGDKDDVLDDGDLSVMRFLSD
LIKRQHAARGPPALRFSYVALHVHKNTTAV
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgtccccggaccttctgcctttcaccgggccggagggcttcggcgacagcgag
gatggcgaggcggagggagagcgcggaacggcgagggggcttcttcccgaggagctctcc
atcccgccgctcccctccgacgcgagcggcggtgggcacccgtggagctccgccgccggt
tttcacagggacttcgtgctggtggccgagttctccgaggaggtggggcctacgcccgtg
atgaccatacctgacgaggcgggcgcgtcgggatccctggacctgaaccacttctctgtg
cgtatcatgtctgtggactaccaggcgtcaggcccgggaggcccgtcctcctcatcctcc
tcggggcttcggctaaacttcaacgaggactccgaggtggtcctgggggactcggccgac
tgggtctttgcctacgtacgccacatgacccttctggacctgtcggcccgcggtatggtg
cgccccttctgcatggcctacgtgtgttcaagccaggccaagatcatggacaactttgga
cggctgtcggcaggatttggcttggctgccgacagcctcaagactggaaaccggcagacc
ttctccttggagctgcaccgcaagcttcaccagcttcaatacaaacgcttggcgctgctg
caagatgacagcatgagcggcgcgggtgagcagctggaggcggtggagcgagccatcgcc
acgcacaaagatctcctccgtcaggttacttcctaccccaacaggaagctaaagcagccc
gacttcttgccctacgagccggccgacgtctcgacggacgccacctccatcccgcctcct
cctccaccggcagcccacctcgccggccccgaaggtcggctgaagccattgcaggaactc
tgcagcacctacttcctgtcgttgatgacggagcagctggcgcaagcggaggtccgcctc
cgcggcgacgtcaccgccctgcggagcgccggcatcacgcgcgcgctgaacaggaagctc
agactgaccaacttcctcttcgagcagcctgaggatgatgaagaggaggaggaggaggat
ggagaggaagcggttgcgcgggaaacaggaagttggccgagctccgagtcctccgtggag
gcgaaagaagaagagatgacgggaagcaccagcagcggagacagcatacaagtcattggc
acggagagatcctacaaaacactggcctcgtccgctgcgcccgtcacctcgtctttgctt
cccggctcgtccgatcctgcgccgattgccgttcctctggccacgccgctcccctcactc
gattcgtctctcgtggcagtctcggacccgggacctcggcgcctcagagtctacgtcggg
aggaccaacagcgaagacagcatcgaggtcctcagcaccaccgagtccatcatcgccgaa
gaccttgccgccatcagcgaggaagaagagcccatcaaagatgacaaaacagacgttacg
gcaaaggacgctcgagcgggtagcgcttatcaaatgctgcccaatctcccggcggagccg
tggtcttggccacagagcgtggacgaggcgtcggacggcggcgccgagacgcacgcgccc
caccggacgctctcctcggacgaggcgggactgcgtgcgcagcgcttcgtcaagcagaac
tccttctctcggcaggtggtcttctgcctgctgagcggccgtcctctggtgctgctctcg
ggagatggcgacaagctgcggaagacggtggacgccctggcgctcttcctgccggctccc
gccggcgccgtgatgccgtgtttgagcgcaccgctccagctgagcgacctgctcacgtgg
aggctgattggattccacaggtctccgtcctcgggcccgcttcactggctgagtcgttac
agtcgctacctggccgtgctggacttggaccagaggacgctacgctgccagcggtactcg
ggttcgctagcgggctccctggtgggctcggccgtgcccgccggcgccttcctgctgcac
gtgcagagcggcctgacggcgctggcgaatcgggcgctgctcttcaccttcgcccggaga
ggagataaagatgacgtgttggatgacggcgacctgagcgtgatgcgtttcctgtcggac
ctcatcaagcgtcagcacgctgctcgcggaccgccggcgctgcgtttctcctacgtggcg
ctgcatgtgcacaaaaacaccaccgctgtatag
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