Syngnathus scovelli (Gulf pipefish): 125969213
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Entry
125969213 CDS
T08785
Symbol
ldlrb
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03272
Virion - Hepatitis viruses
sscv04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
125969213 (ldlrb)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125969213 (ldlrb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125969213 (ldlrb)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
125969213 (ldlrb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
TMEM154
Plasmod_Pvs28
Vgb_lyase
hEGF
Motif
Other DBs
NCBI-GeneID:
125969213
NCBI-ProteinID:
XP_049577022
LinkDB
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Position
5:complement(4951063..4965496)
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AA seq
851 aa
AA seq
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MGKKLLDMRRLSFCLLMLLHCSALTAFECSSDQITCANGRCITRRWVCDGFDDCGDGTDE
LPETCEARKCLASEFSCGAPEHRCVPLSWHCDGKVDCANGTDELNCTAKQCTDEQFRCNS
GQCISTSFVCDHDNDCPDGSDEASCPRPTCSPLFFQCNNTACMLDMWRCDGENDCSDGSD
EWPENCADKPPQKKVVTCKDHEFQCADGECIPEKWRCDGSADCNDQSDEVNCTRPTCLPD
EFTCSDGTCIHGSRQCDKVNDCSDSSDEIGCHAENVCDGATEFQCHSGECINMAKVCDTR
RDCRDGSDEPVDQCDHNECLVGNGACAHGCIDHKLGYSCSCPVGFILKADNRSCEDIDEC
AEPDTCSQICINEPGSYKCDCKDGYEMDPASKTCKAVSGTTAALYFTDRHDVRMLTVDRS
DYMPVMSGLKNAVALDMDISNKIIFWSDLSHKKIYSCEMDTAANSSQHTVVIGTGIEAPE
GLAVDWIHGNIYWTDSSLQSISVATTNGHKRKTLITDNLQKPRAITVDPVNNFMYWTDWG
ETPRIEKSGLNGADRVALVTDDIVWPNGITLDLVNQRLYWVDSKIHKLSSVDVNGGTRHT
LIVSKEKLLHPLSLAVFEDKVYWTDTGNKAVYSANRETGHDIKMLASDLYQPEDIVLFHD
LKQPSGSNWCTEKNRMNGGCEFLCLPAPVINQRSAKYTCACPDHMSMAADMRKCVEGSVA
PEDRPLPTNTSTDAETTTTTSRTSSQNPDVSPRLKPSAPAQTNRLTDGTTEEHSSHTAGL
FIVIPIVVMIMLLFGAMLLWRHWRLRNTNTMHFINPVYQKTTEDEMQICRNSEGYVYLQR
QMLCTEDIDIA
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaaactgttggatatgaggcgactgagcttttgcctactgatgcttcttcat
tgctctgcactgacagcattcgaatgcagctccgatcaaatcacgtgcgcgaatggccgt
tgcatcacccgcaggtgggtttgtgacggctttgacgactgcggcgatggaactgacgaa
ctgcctgaaacatgcgaggccagaaaatgtctggcgtcggagttcagctgcggtgccccc
gagcatcggtgtgtgccgctgagctggcactgcgatggaaaagtggactgtgcaaacggc
actgatgaactaaattgcactgcaaaacaatgcacagacgaacagtttcgctgcaattcc
ggccaatgcatctccaccagcttcgtgtgcgaccacgacaacgactgcccggacggctcc
gacgaggcttcctgcccgagacccacttgcagcccgctcttcttccagtgtaacaacacg
gcgtgcatgctcgatatgtggcgctgcgacggcgagaacgactgcagcgacggctcggac
gagtggccggagaactgtgcggacaagccgccccagaagaaggttgtgacttgtaaggac
catgagttccagtgtgctgatggagagtgcattcccgagaaatggcgctgcgatggaagc
gcggactgcaacgatcagtcagatgaagtcaactgcactcgccccacttgtctcccagat
gagttcacgtgtagtgacggcacttgtatccacggcagccgccagtgcgacaaagtaaac
gattgttcggactccagcgatgagatcggctgccatgcagaaaatgtgtgtgacggtgcc
actgagttccaatgtcacagcggggagtgcatcaacatggccaaagtgtgcgacacgcgg
agagactgtcgagacggttccgatgaacccgtcgaccaatgtgaccacaacgaatgcttg
gtcggaaatggcgcttgcgcccacggttgtattgatcacaaacttggctacagctgctcc
tgccctgttggattcatactgaaggcggacaacagaagctgcgaagacattgacgaatgt
gccgagccagacacttgcagccagatttgcatcaatgaacccggcagctacaagtgcgat
tgtaaagacggctacgagatggacccagctagcaagacgtgcaaagccgtttcaggcacc
acggccgcactttatttcaccgatcggcatgatgtgaggatgctgacggtggatcggagt
gactacatgcctgtgatgagcgggctgaagaacgcggtggctttggacatggacatctca
aacaagatcatcttctggtcggacctttcccacaagaaaatctacagctgcgagatggac
acggccgctaactcctcccagcacacggtggtgatcggcactgggatcgaggccccggaa
ggcctcgccgtcgactggatccacggcaacatctactggaccgacagttctttacagagc
atctctgtggccaccacaaatggccacaagaggaaaacactgatcactgacaatcttcag
aagccaagagccataacggtggatcccgtgaacaatttcatgtactggactgactggggc
gagacgccgaggatagaaaagagcggcttgaacggagctgaccgtgttgccttggtaacc
gacgacattgtgtggcctaatggaatcaccctcgacctcgtcaaccagcgtctctattgg
gtggactccaagatacacaagctctccagcgtggacgtgaacggcgggaccagacacaca
ctcatcgtcagtaaagaaaagctcttgcatcccctctcgctggctgtgtttgaggataaa
gtgtattggaccgacacgggcaacaaagctgtttacagcgccaaccgtgagacgggacac
gacatcaagatgctggcctccgacctgtaccagccggaggacatcgtgctcttccacgac
ctcaagcaaccgagcggttccaactggtgcacagagaagaaccgtatgaatggaggctgt
gagttcctgtgccttcctgctcctgtcatcaaccaacgctcggcgaaatatacctgcgcc
tgccctgatcacatgagcatggcggctgacatgaggaaatgtgtggaaggctcagtagcg
ccagaggatcggccgcttccaacaaatacctcaactgatgccgaaacaaccacgactacc
tcaagaaccagctcccagaacccggatgtctcccctcgactgaaaccttcagctccagct
caaaccaacagacttacagacgggaccaccgaggagcactcgtcccacactgctggtctc
ttcatcgtaattccaattgtggtcatgatcatgctgttatttggagccatgctgctctgg
agacactggagacttaggaacaccaacaccatgcactttatcaaccccgtttaccagaaa
accacagaagacgagatgcaaatctgcaggaactctgaaggctacgtctatctgcagagg
caaatgctgtgtacggaggacatagacattgcatga
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