Syngnathus scovelli (Gulf pipefish): 125976955
Help
Entry
125976955 CDS
T08785
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125976955 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
125976955 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125976955 (lsm3)
03041 Spliceosome [BR:
sscv03041
]
125976955 (lsm3)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125976955 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
125976955 (lsm3)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125976955 (lsm3)
Complex C
U2 snRNP components
125976955 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
125976955
NCBI-ProteinID:
XP_049588963
LinkDB
All DBs
Position
11:complement(2145953..2147368)
Genome browser
AA seq
102 aa
AA seq
DB search
MADEVEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagtggagcagcaaccgagcacgaacaccgtagaagagcccctcgacctg
atcagactcagtctggacgagaggatctacgtcaaaatgaggaacgacagagagctgcga
ggacggctacatgcatacgatcagcacctgaacatgattctgggagatgtggaggagacg
gtgaccacggtggagattgatgaggagacgtacgaagaactttacaagtcgaccaagagg
aacattcccatgctgttcgtcagaggtgacggcgttgtcctcgtagcgccacccctacgg
gtgggctga
DBGET
integrated database retrieval system
