Syngnathus scovelli (Gulf pipefish): 125977226
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Entry
125977226 CDS
T08785
Symbol
si:ch1073-335m2.2
Name
(RefSeq) msx2-interacting protein
KO
K25100
Msx2-interacting protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
125977226 (si:ch1073-335m2.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125977226 (si:ch1073-335m2.2)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
125977226 (si:ch1073-335m2.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_PARP14_3
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
125977226
NCBI-ProteinID:
XP_049589499
LinkDB
All DBs
Position
11:8951690..8967106
Genome browser
AA seq
3108 aa
AA seq
DB search
MMVRETRHLWVGNLPEHVREEKIVEHFKRYGRVESVKVLRKRGSEGGVAAFVDFVDIKSA
QKAHNAVNKMGDRDLRTDYNEPGSVPSAVRGLDDSSPSSSRDVTGFSRGTVGPVFGPPVS
LHTREGRYERRIDGSSETRDRAYDHSPYGHHERSGTFDRQRHYNADYYRERSLFAAAGPG
SSAISGTFEASDPHFDSRIRDPFALAPATRRDLYRDDRGRRVDRTYHHRRSRSSHSSQSR
HPSPQRTTGQSSKSAHSPKCAPLSPGRGPRSQSCSRSSSSDSVSSTSSTGSGSDSNSSSS
DGSRARSVQSSAAHAPPQSSSSMVLDSDEPRRSFGIKVQNLPARSTDTSLKDGLFHEFKK
HGKVTSVQIHGASEDRYGLVFFRQQEDQEKALSVPKGKLFFGMLIEVTAWNGPETESENE
FRPLDGRIDEFHPKATRTLFIGNLEKTTSREQLFEIFQRFGEIVDIDIKKINGVPQYAFV
QYSDIASVCKAIKKMDGEYLGSNRLKLGFGKSMPTACVWLDGLTTNITEQYLTRHFCRYG
HVVKVLFDRMKGMALIFYNNTDFAQNAVRETKGWKIGGSKIKVDFASQESQLAFFRSMQT
SGQDIRDLYEIPAERREDRRPLYHEFTAERAYYETLRTPGLYTEDARREYAARSRDRFPE
LEHFQGEHYDPRYHEDPRDYRDYRDPFEQDIRKYTYIQRERERFEADRNRWSPSHHRRPI
TPAVSPSPTERAPRESERRVYSQSSERSGSVSSLSPPHFEKSEKTLVEHASKSDKTEKSS
QSDRAVGPEKTKRPKRKEKGEKAERVKSRKVKGQSPSNTLADTEPNAAQEAGHAKGKGVE
QDAQDRQKHKGDNDTQCSTALHDSAKGERSETAKGDNSDMDGKGRVKKHIKTEIGNDGKD
SSVDSDRLAARKRRFADSSGKTVHQKRSRLDEEDCNQSQDPSAKEIDSDKHKDAQRRDSR
LKSGTSKDVQEDIKVPREKFEGSLESSESKRLPAHTTSRRFSHDGNPDQGSSREQEHSAI
FKFTGQVPETSKGIKIKEEHVDIDLSQSYRKQMEQNRRLHQQQHRESDKPGKSAKPGSPQ
ESETEDLEHRSLVHEVGKPPEDVTDNFPSHKQKKLDLFDSEGIKRERVYRSFRQKSEDPE
WNNTSSPGHQFAHHTEEDFDHSQKELVKNEKTNPDMEPLVKRTHNAHVNKPTTLNTEEEQ
QKRWESRVKQNTLPDLNFSRNLNKNVHNRKRLEYGVWQDIEPGEVRSDSEEDRESKPRSP
VASTSKSFSDRPRGERLSDPKTAHLERNKFYSFALDQTITPDTKALLERAKSLSSSREDN
WSFLDYDSHFAGLRSRKDTEKIESTPRPTPSWYMKKKKIRSGSEDKLDDRKEEPKPEEHE
RRELFASRFLHSPVFELDSRRLQHLERKYEEAENAQNQQSNQHGTIDGELDSGPVVLFHS
RFLELTRLQQQKNKTQPEEMVDEIKDDKASMEEPQMLQSPETKESLPDPEIKPISPAEEL
VSEPTVTPPVSHTVPKELPPIEQPPQLPTEPSPTVVFIKQEKEIEHLPEQYPPTETNTDS
EAPPIKQEANYLEAHFKLSPSEIKVDEVIDVKPSIEEPSSCNLQEFVSSSEAEVASVAGN
TEVTQAQSSSPHTREDSIVKKEPYATVSEPEEETILKVSKEFSDDTNTEGTSAPKEYKTK
EMKTKKTKPTPAEVATSVVVPASAPEKQATRKSERIDKEKLKRGSSPRAELKSTGKSPLH
GSDGDVSEQSISSGRARRTNVKSVYARKRGTEKDPTQQQNNEQDVPAPAPPVKRGRPPKN
RRQSEEVSAVKIDKIKMDNKDIDPNESESCDRIQKNLKGKSSPTATKGSTSQLSTAQLCG
STKRGEKSELTEDNDQQMDCTDQSTLTLIDSSKEAQSPQVEQKKEDKYKRDIKDSDTLNF
DGKSNGKEEHPLVLEDKMTTEKEKPIKGKSKTPRTPKSPVLKNLKIRLNVKEVKDHVSKC
TGRGASNEDGDISNLEKKEHLEKSLSSHEMELEQAVENIAKLTDPSFPREPQTPTGPITD
LKSFSDDEKPNPASETELIAAIDSITAEDIASVPLPQAPPVGVDISSEPEMQDSIQPPKE
DKPEMSTVNIQEEPLQTATPEKATKGRPKTPKHKGQKQVRKDSKEPPPSEEKATPSLLAS
SIKVVPEIVPSAAATAAVITPTTWKSEQEPLAIKAPDVKESESPTEEQIQHIKPVYPQSK
SPVCPKPQSPSMSPLACRPNIKPIQNSRAPVSPPDWLRHSADSGVPSSPALPVTPKDNQP
DSENIEIDRGSSDLRQILLKHKTMSLPGSSFVPANVQPAVQDQLLAERNTTLTVVPNKSP
LPDCRMPSQSVRTPATQPSPETKSVISVIASTALHSSVISRVCIPPEHEDVKLNIGNQGS
DMTLPKHNYRPSKDDTLPYHGPTIGDEGGSATRFIVESSTLGTSSCPGLRVNTSEGVVVL
SHSGQKPEGPQRISAKISQIPQATAGDMESQQLVSMPQIKQDMYSHPQTGLQKGSFQTDH
GHSAKTQSTFSSNKQEGTGLEKMEPTYHAGPQGVVKRLPQGNQSMSSMYHQEYLPTKHQK
KIDSGESHSTDGSKAQWASAISPAISPHLPSPPGNHFVTAAGDRTPSHLSGNKQEPRSPR
KSSHPHSSSPKGIPVMLPAMQQFISGVHHPEQSVIMPPHSVPGGLGRMSPHPATQSIPVG
HLVQGDVRVNTPPLSVMSYGMHSESLGSPWSGSMQQRPTSPQTVGRDKVLKVNPSALRSH
DIDQEDSRRFHQQGRQPAAQLKPETMQSDPRGSFRSGVPIEALMAQREMRALLQQQGERS
STDPHSGHLQETHPPTSAPSSLPMSLSPRAHILPKGVSEKDIAKPLEAKRPHSPLSKDGL
MAIRQPGPTISSPQRAPLMPPGLSGTFPEYSQMYSNPRGVHSPMPDSTPHVVPDGKIAQP
NMVQLLIKHPIIWQGLLALKNDTAAVQLHFVCGNKALAHRSLPLQEGGAFLRIVQRMRLE
ASQLESVARRMTGECDFCLLLALPCGRDQDDVVNQTQALKSAFINYLQTKLAAGIINIPN
PGSNQPAYVLQIFPPCEFSESHLSQLAPDLLNRISSISPHLMIVITSV
NT seq
9327 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccgggaaaccagacacctttgggtgggaaatttgcccgaacacgtccgagag
gagaagattgtggaacattttaaacggtatggacgtgtggagagtgttaaggtcctgcgg
aagcgaggatcagagggcggcgttgcggcctttgtggattttgtggatattaaaagtgct
cagaaggctcacaatgccgtcaacaagatgggggacagggaccttcggactgactacaat
gaacctgggtcagtcccgagtgctgttcggggccttgatgacagctccccgtcgagcagt
cgagacgttacaggattctctaggggaacagttggacctgtgtttggcccccctgtgtcc
cttcacaccagagagggacgttatgaacggagaatagatggtagttcagaaacccgcgac
cgtgcatatgaccacagcccatacggacaccatgagcgcagcgggacttttgaccgacag
cggcactacaatgcggactattacagggagcgctctttgtttgctgctgccggtccaggg
agcagtgccatcagtggaacctttgaggcatcagacccgcattttgactctagaatacga
gaccccttcgctctggcgccggcgacacgtcgcgacctctacagagatgacagaggacgc
cgcgttgatagaacctaccatcaccgccggagccgatcgtcccattcctcccagtctcga
cacccttccccccagcggacaactggacagagctccaaaagtgctcattccccaaaatgt
gcgcctctgtcccctggaagaggcccacgttctcaatcttgcagcagatcctcaagttct
gactctgtgagcagcaccagcagtacaggcagtggcagcgactccaacagcagctcaagt
gatggatcgcgagcgcgttctgttcagtcatcagctgcccacgcgccacctcagtcgtcg
tcgtcgatggtgctcgactcggacgagccacgtagaagctttgggattaaagtgcaaaac
cttcccgcacgatcgaccgacacaagcttaaaagatggactattccatgagttcaagaaa
catggtaaagtgacctccgtgcagatccatggagcatccgaagaccgctatggtctggtg
ttctttagacaacaagaggatcaagagaaagccctgagtgtcccgaaaggaaaactgttc
tttggcatgttgattgaagtcacagcgtggaatggtcccgaaactgagagtgagaatgag
ttcaggccccttgatggtagaatagatgaattccacccgaaagccaccagaacattattt
attggcaaccttgagaagacaaccagccgtgaacaactttttgaaatttttcaacgcttt
ggagaaattgtcgacattgacatcaagaaaataaatggagttccccagtatgcgtttgta
cagtattctgatattgccagtgtttgcaaggccattaaaaagatggatggcgagtatctt
ggcagtaaccgactaaagcttggttttgggaaaagtatgcctacggcgtgtgtttggctt
gatgggctaacaaccaatatcacagagcaatacctcacacgccatttctgtcgttatgga
catgttgtcaaggtgttatttgacagaatgaaaggaatggccctgattttctacaacaat
acagattttgctcagaatgcagtgagagagaccaaaggctggaagattggaggcagcaaa
attaaggtggactttgcaagccaagagagtcagctggcattcttcagatctatgcagaca
tctggtcaagacattagagacctttatgaaattcctgcggaacggcgggaggatcgcagg
cccctgtaccatgaatttacagcagagagagcttattatgaaactttacgaacgcctggc
ctttacacagaggatgcccggagagagtatgcagctcgcagtcgggaccgtttccctgaa
ttggaacattttcaaggagaacattatgacccacgttaccatgaagatccacgggactac
agggattacagagatccttttgagcaagacattagaaaatacacctatattcaaagagaa
cgagaacgttttgaagctgaccgaaacagatggagtccctctcatcatcggcgccccatt
acccctgcagtgtcgccatcgccgaccgagcgagcgccgagagaatcggagcgccgggtt
tatagccagtcctctgaaagaagtggtagtgtaagctcactctccccgccacactttgaa
aaatctgaaaagactttggtggaacatgcctcaaagagtgacaagactgaaaagagcagt
caatctgacagagctgtaggccccgagaaaaccaagcggcccaaacgaaaagagaaaggc
gagaaagccgagagagtcaaatcaaggaaagtaaaagggcaatctccatccaatacgcta
gcagacacggagcctaatgctgcacaggaagcaggccatgcaaaaggaaagggagttgaa
caagatgcccaagacaggcagaaacacaagggagataatgacactcagtgctcaactgcg
ctccatgattcggcaaaaggcgaaagatctgaaacggcaaaaggtgataattctgatatg
gatgggaaaggtcgagtcaaaaagcatattaaaactgagattggaaatgatgggaaagat
tcgtccgtggattcagatcgccttgctgcaagaaaaaggcgctttgctgactccagtggg
aagactgttcatcaaaagcgaagcaggcttgatgaagaggattgtaatcaatcgcaagac
ccgagtgcaaaagagatagactctgataagcacaaagatgcccaacgtagagattcaaga
ttaaaaagtggaacttcgaaggatgttcaagaagacattaaagtgcccagagagaaattt
gagggatcgttggaatcttctgagtcaaaacgactcccagcccacactacatcccgaaga
ttttcacatgatggaaatccagaccaaggctcttcaagagaacaggaacacagtgcaatt
ttcaaatttactggtcaggtgcccgaaactagcaaaggcatcaaaattaaggaggagcat
gttgatattgacctgtctcaaagttaccgcaagcaaatggagcaaaatagacgcttgcat
cagcagcaacatcgagagtcggacaaacctggaaaatctgccaaaccaggaagtccacaa
gaaagtgaaactgaagatttggaacatcgcagtcttgtgcatgaagttggtaaaccacct
gaggatgtcacagataacttcccctctcacaaacaaaagaagcttgacctgtttgacagc
gaaggaattaagagagagcgggtgtataggagcttcaggcaaaaaagtgaagatcctgaa
tggaacaacacttcctctccaggacaccagtttgcccaccatacagaggaggactttgat
cattcgcagaaagagcttgtaaaaaatgagaaaactaaccccgatatggagccgcttgtc
aaaaggacacataatgcacacgtcaacaaacccaccacactcaatacagaagaggagcaa
caaaaacgatgggagagcagagtaaaacaaaacacgctacctgacctaaacttttctaga
aatctcaacaaaaatgtccacaaccgcaaacgtttggagtacggcgtttggcaggatata
gagccaggggaggtaagatcagactctgaagaggatcgagaatccaaaccacgttctccc
gtggcatctacttcaaagtctttttctgacagaccgaggggtgagagactttccgaccca
aaaacagcacatctggaaagaaataagttctactcatttgcactcgaccagacgatcacc
ccagatacgaaagctctacttgagcgtgcaaaatccctctcgtcttccagagaagataac
tggtccttcttagattatgattctcactttgcgggtctccgtagccgcaaagatacagag
aagatagaatcaacaccaaggcctacaccatcgtggtacatgaaaaagaaaaagatccga
agtggatctgaagataaactcgatgatcgaaaagaggagccaaagccagaggaacatgag
cgaagagagctgtttgcttctcgcttccttcacagccctgtttttgagttggactcgaga
cgacttcagcatctggaacggaaatatgaagaagctgagaatgcccaaaaccagcaaagt
aatcagcatggaaccatcgatggtgaacttgactcgggtccagttgttcttttccatagt
cgttttttggaactcacaagattgcagcaacaaaagaacaaaacccaaccagaagaaatg
gtcgatgagataaaagatgacaaagcatcaatggaagagccacaaatgttgcaatcacct
gaaacaaaggaatctctccctgatccagaaataaagcccatcagtccagctgaagagttg
gtatctgaacccacggtaacaccgcctgtctcacatacagtgccaaaagaacttcctcca
atagaacaaccacctcaattacccactgagccatctcctactgtggttttcataaagcag
gaaaaagaaattgaacatctgcctgagcaatacccaccaactgagactaacactgattca
gaagctccacccatcaaacaagaagccaattatttagaagctcattttaaactttctcct
tctgaaattaaagtggatgaggttatagatgtcaaacctagtatagaagagccaagtagc
tgcaatttgcaggagtttgtcagtagttcagaagcagaggttgcttctgtggcagggaac
actgaagtcacccaagcccaaagttcttcacctcatactcgtgaagacagtatagtgaag
aaagagccatatgccacggtttcagagcctgaggaagaaacaattcttaaagttagtaaa
gagttcagcgatgacactaacactgagggaacctctgcccctaaggagtataaaacaaaa
gaaatgaaaactaaaaagaccaagccaaccccagctgaagttgctacaagcgtcgtcgtg
cctgcatcggctccggaaaagcaagccacgcgcaagagtgaacgcattgacaaagagaaa
ttgaaacgtggctcttccccaagggccgaattgaagtccacaggcaagtctcctcttcat
ggctcggacggtgacgtctcggagcaaagcatatcgtcaggcagagcgagacgtacaaat
gtgaaatccgtttatgcgagaaaacggggcacagaaaaggatccgacgcagcagcagaac
aatgagcaagatgtacccgcaccagctcctccagtcaaacgtggccggcctcccaagaat
cgtaggcagagtgaagaagtctcggcagttaaaattgataaaataaaaatggacaacaag
gacatcgatccaaatgaatctgagagttgtgacagaatccagaaaaatttgaagggaaaa
tcctcccctactgccacgaaaggttcaacaagtcagttgtccacggctcaactctgcgga
tcaacaaagagaggagaaaaatcagagttgactgaggacaatgatcagcaaatggattgc
accgatcagagtaccttgactttgatagattcatctaaagaagcccaatcacctcaagtt
gaacaaaagaaagaggataaatacaaaagagatatcaaagacagcgatactttgaatttt
gatggcaaatcaaacggcaaagaggaacatccacttgtgttggaagacaaaatgaccaca
gaaaaggagaagcccatcaaaggaaaaagcaagacaccaaggaccccaaagtctcctgtt
ctgaagaacctcaagatcaggttgaatgtcaaagaggtgaaagatcatgtttcaaagtgc
accggcagaggggccagcaatgaagatggtgacatttctaatttggaaaagaaagaacat
ttggaaaaaagtttaagttcccatgagatggaattggaacaggccgtggagaacattgcc
aaactcacagatccgtcttttccaagagaacctcaaacaccaactggcccaatcacggac
ttgaaaagcttctcagatgatgaaaaacctaatccagctagtgaaacggaactcattgct
gcaattgactccatcactgctgaggatatagccagcgtccctttaccccaagcaccacct
gtcggcgttgatataagttcagaaccagagatgcaagactcaattcagcctcccaaggaa
gacaaacctgaaatgagcactgttaatattcaagaggagcctctccaaacagccacacct
gaaaaggccaccaagggaagacctaaaactcccaaacataaaggccaaaagcaagtacgg
aaagattcaaaagaacctccaccaagtgaagagaaagccacgccaagtcttttagcatcc
agtataaaggttgtcccagaaattgtcccatcagcagcagcgacagctgctgttatcacc
cccactacatggaagtctgaacaagaacctttggccatcaaggcacctgatgtgaaagag
tctgaatcacctactgaagagcagattcaacatatcaaacctgtttacccccagtccaaa
agtccggtgtgcccaaagccacaatcaccctccatgtcaccattagcatgcagaccaaat
atcaaacccattcaaaacagtcgagcgcctgtctcgccaccggactggctccgccactct
gccgattcaggagttccttcttcaccagcattgccagtcacacccaaggataaccaacca
gactctgaaaatatagaaattgatcgtggctcaagcgatctgaggcagattcttttgaaa
cacaaaaccatgtctctgcctgggagcagtttcgtaccggctaacgtgcaaccggcagtc
caagatcagctcctcgctgagcgtaataccactttaacagtcgtgccaaataaatcgccc
ctacccgattgcagaatgccgtctcagtcagttcgaacaccagcgacgcaaccgtcccct
gagaccaagtctgtgatctccgtcattgcatccactgccttgcactcctctgttattagt
cgtgtatgcatccctccagagcacgaagacgtgaaactaaatattggtaatcaaggttca
gacatgactttacctaaacacaactacaggcctagcaaagatgatacgctaccctaccat
ggaccaactatcggtgatgaagggggaagtgctacacgcttcattgtggaaagttccact
cttggtacaagctcctgcccgggtctccgggtaaatacatctgaaggagtcgttgtactc
agccactcgggacaaaaaccggagggaccccaacggataagtgcaaaaatcagtcaaatt
ccacaagcaacagcgggtgacatggaatctcagcagctggtttccatgccccaaattaaa
caagacatgtacagtcacccacagacaggcctccaaaaaggctctttccagacagatcac
ggtcattctgctaagacacagtcgaccttttcttctaataaacaagaaggtacaggtttg
gagaaaatggagcctacttatcacgctggtcctcaaggagtcgtcaagcgtcttccacag
ggcaatcaaagtatgagctcgatgtaccaccaggagtacctgccgacaaaacatcaaaag
aaaatcgatagcggagagtcgcatagcaccgacggttccaaggcacagtgggcctctgcc
ataagtcctgcaataagtccacatttgccctctcctcctggaaatcactttgtcacggcc
gccggggacagaactccctcgcatctcagtggcaacaaacaggaaccgcgatccccgcgc
aagtcaagtcatccgcattcttcatcacctaaaggcatcccggtgatgcttcccgccatg
caacagtttatttctggtgtgcatcatccagagcagtccgttatcatgccgcctcatagt
gtgcctggaggcttgggccgaatgtcacctcaccctgctacccagtccatcccggtggga
catctggtccagggagacgttcgggtcaatactcccccgctctcggtgatgagctacggg
atgcatagcgagtctctcggatctccctggtccggttccatgcagcaacggccgacttca
ccccaaactgtcggtagagacaaggtcctcaaggtgaacccgagtgctttgaggagtcac
gacatagaccaagaagactccagacgcttccaccagcaaggacgacaacctgccgcacag
ttaaaaccagagaccatgcagtctgatcctcgggggagtttccgaagcggtgtgccaatt
gaagcgctgatggcgcagagagagatgcgcgcgctcctacaacaacaaggagagcgttcg
tccacagaccctcattcgggccaccttcaggaaactcacccccccacctccgcaccttcc
agtttacccatgtcattgtctccgagggcgcacattcttcctaaaggtgtttccgagaag
gacatagcaaagccgttagaggctaagaggccccactcccctctttctaaagacggatta
atggcaatccggcagccaggaccgacaatatcgtctccccagagagcgccgctcatgcca
ccaggactaagtggcaccttcccggagtattctcagatgtactccaacccaagaggcgtc
cattccccgatgcctgactcaacaccgcatgttgttcccgatgggaagattgcacagcct
aatatggtgcagctgctcataaaacatccaatcatttggcaagggctcctcgcgctaaaa
aacgacacagcggcagtccagttgcattttgtgtgtggaaacaaagctttggctcatcga
tcactgcccctgcaggaaggtggtgccttcctccgaattgtccaaaggatgagactcgag
gcatctcagctggagagcgtcgccagaagaatgacaggcgagtgcgacttctgccttctg
cttgctttgccttgtggacgagatcaagatgacgttgttaaccagacgcaagctctcaag
tccgccttcataaactacttgcagacaaagttggcggctggcattattaatatcccaaat
ccaggttccaatcagccggcctacgtgttgcagattttcccaccatgtgaattttcagag
agccacttatctcagttggcccccgatcttctcaacagaatctccagtatctctcctcac
ctcatgattgtcatcacctctgtgtga
DBGET
integrated database retrieval system
