Syngnathus scovelli (Gulf pipefish): 125978482
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Entry
125978482 CDS
T08785
Symbol
ltbp1
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1 isoform X2
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
125978482 (ltbp1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125978482 (ltbp1)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
125978482 (ltbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
EGF_3
hEGF
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
125978482
NCBI-ProteinID:
XP_049591824
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All DBs
Position
12:557903..582849
Genome browser
AA seq
1544 aa
AA seq
DB search
MFWSRGLLLFFAILLSPFCLSAGAALPHNQSGVRKLYVLQPGPGPGPGPGPGPGSAGANR
EDAMRVSSISTRHGASGLPHSYSVQLSAKLGGQVRTRRMGNQASTAQEPIVRRHSAAEHR
QLLKQSGVNICGGQCCHGWSKAQGSQRCTTPNCIPQCQNGGMCLRPQLCVCKPGSSGKAC
EQKTVPTPPHGLSYSHSHSHSVSHSVSHSQPGKGASNDHNAGAQRPIPQQAHVPSNAPQA
NNIAQMKLTVKPSPQFVRPPHYIQQHIQQQIRSMPVHPGQQYVIKPKYYHTHSTHTQTHF
QPQVERPIPLSGAHVGNHTGRIKVVFTPTICKFTCVGGRCHNNCQQGNTTTIISENGHAT
DTLTAPNFRIVVCHLPCINGGKCSARDKCQCPPNFTGKFCQIPLQNGQHQPQHTSGSYPP
TQVHSTHTLPLTYGNGQNTVFSPNVVNIHIKHPPEASVEVHQVSQLDERGPRPGSSSSSS
YTFHHTQSHQKVQHHGYNIIYPGQHGDQTTQYQPVSSKNTLGRCFQETVGSQCGKALPGL
TKQEQCCGTMGTSWGFHKCQKCPKKPSAIPLIDCPQGYKKINSTHCQDFDECQLQGVCPN
GNCLNTVGSYRCMCKPGYIADPMLTTCISNIAAAVQEEKGACFRLVSSGRQCLHPVSAQL
SKQLCCCSVGKAWGPHCDKCPPPGTATFKEICPGGMGYTVLPNPPVKQPVTVQQTASDAL
APRPLPTPAKPIMAFGKPEREIIPATTAPDQELVGPAVSNRPVSDSVLPQLSPGVSTVKM
NAAYPEVVEQSSPPVPVEIFPSNAGQDIAPTISAEVDECQINPYICGQGLCYNTAEGYTC
HCDDGYRLNHALTSCVDLDECLEKPSLCSGGLCQNTEGSFLCVCPQGFFVDEEGTTCVDI
NECANKTVCPSGICINIPGAYECGSCPPGFLARGGQCVDADECQDQRVCTRGHCVNTDGS
FICQCGPGFRVSLSGDQCDDVDECSEDDRPCKSIGECVNNMGSYTCTCPRGYRQMDGTSC
TDVDECVDEPELCSPHGQCLNTEGSYACACGSGFTAPLDTPSCDDIDECGLNETLCSPHG
FCENRLGSFRCLCDPGYQENQDGQSCVDVNECELLNSVCGEAQCLNTDGSFVCTCPSGQE
YNVMVARCEPVPTVSPIERKECYFHLNDENLCESVLTSHVTLQECCCTLGAGWGDNCEVY
PCPVNGTDQFNQMCPSGKGFIPSGDLLYEVPTAESYKNADECTLFGQEVCKGGFCQDTVG
SYECYCKTGQDYDPAKLECRDINECLDESVCVGAECLNTEGSYICFCNHPMVLDANSNSC
IFVPDAAEQHEVGQMDFQGICWQKVTDSMSCTLPLGDDRKTTFTECCCLFGEAWGMDCAL
CPPKNTADYASMCNLAGRHPYGRDALVAGALHEYEVSLDYSPSPDDNPALPFYDHEEYPF
KAFEGLRADECGVLNGCENGRCVRVQEGFTCECFDGYTLDLPRMACIDVNECSELNDRMS
LCRNARCINTVGSYRCACLPGFTPSEKPNYCVETVSRQTSAHAQ
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgttttggagtaggggcctcttgcttttctttgctatccttctctcaccattctgcttg
tcagctggggcagcgctaccgcacaaccagagcggcgtcaggaagctgtacgtgctccaa
cccgggccgggtccaggtcccggtccaggtcccggtccgggctcagcgggggctaaccga
gaggatgccatgcgagtcagttccatttcaacgcgtcacggcgcgtcggggcttccgcac
tcttacagcgtccaactcagcgccaaattgggcggccaggtccggacccgccggatgggg
aaccaagcctcgacagcccaggagcccattgttcggcggcacagcgctgcggagcacagg
cagcttctcaagcagtctggagtgaacatatgtggaggccagtgctgtcatggatggagt
aaagctcaaggatcccagcgctgcacgacgcctaactgcatcccccagtgccagaacgga
ggaatgtgcctcaggcctcagctgtgtgtctgcaagcctggctcaagcggcaaggcatgt
gagcagaagactgtgcccacacccccccacggcctcagctacagccacagccacagccac
agtgtcagccacagtgtcagccacagccagcctgggaaaggagcgagcaatgatcacaac
gcaggagcacagcggcccatacctcagcaagcgcacgtgccttcgaacgcacctcaagca
aacaacattgcccagatgaaattgacagtcaagccgtccccacagtttgtgaggccgccg
cattatatccaacaacacatccagcaacaaattcgctcgatgcccgtgcacccaggccag
caatatgtcataaagcccaaatattaccacacacacagcacccacacacagacacacttc
caacctcaagttgaaaggcccatccctctatcaggggcacacgtgggcaaccacacaggg
aggatcaaagtggtgttcactcccaccatctgcaaatttacctgtgtgggagggagatgt
cacaacaactgccagcagggaaacaccacgacaatcatcagcgaaaatggccatgccact
gatactctgacggcacccaacttcaggatagtggtgtgtcatttgccttgtattaacggc
ggcaagtgcagtgccagagacaaatgtcagtgtcctccaaacttcactggaaagttctgc
cagattccacttcaaaatggacagcatcagccccagcacacatcaggcagctaccctcca
actcaggtccattccacacacacgttgcctctgacctacggcaacgggcaaaacacggtt
ttcagtcccaacgttgtcaacatccacatcaaacatcctcccgaggcatccgtggaggtc
caccaggtatctcagctggacgagcgaggtccccggccgggatcgtcttcctcctccagc
tacactttccatcacacccaaagccaccagaaggtccagcaccacggctacaacattatc
tacccgggccagcacggggaccagacgactcagtaccaacctgtctcctccaagaatacg
ttgggccgctgcttccaagaaactgttggtagtcagtgtgggaaagctctcccagggctg
accaaacaggagcagtgctgtgggaccatgggaacatcgtggggtttccataaatgccag
aagtgtccaaagaaaccatctgctattcctctgatagactgccctcagggttacaagaaa
atcaacagcactcattgccaagattttgatgagtgccagctgcaaggggtgtgtcctaat
ggaaattgtttgaacactgtgggcagctatagatgcatgtgtaaacctggctacatcgct
gaccccatgctcaccacgtgcatctccaacatagctgccgccgtccaagaggagaagggg
gcttgcttccgtttggtgagctcagggaggcagtgtttgcacccggtgtcggctcagctg
agcaaacagctctgttgctgcagtgtgggcaaagcctggggaccgcattgtgacaaatgt
cctcctccgggaacagctacgttcaaagaaatttgccctggcggcatgggctacactgtt
ctcccaaatccgcccgtcaaacaaccagttacagtccagcagacagccagtgatgcgctc
gccccccgtcccttgccaacgccagcaaaacccataatggcttttgggaagccagagaga
gagattataccagcaaccactgccccagatcaggagctggtaggacctgcggttagtaat
aggccagtcagtgattccgttctaccccaactatctccaggtgtatccactgtcaagatg
aatgcagcttacccagaggttgttgagcagagttccccgcctgttccagtggagattttc
ccttcaaatgcaggccaagacattgcaccaacgatatccgcagaggtggatgagtgccag
atcaacccttatatttgcggccaagggctttgttacaacacagccgaaggctacacctgc
cattgcgatgacggctaccgcttgaatcatgcgctcacctcctgcgtagatttggatgaa
tgtttggagaagccatctttgtgctccggtggtctgtgccaaaacaccgagggtagtttc
ctgtgtgtgtgtccacaaggattctttgttgatgaagagggaaccacttgcgtggatatc
aatgaatgcgcaaacaagacagtgtgtccatctggcatttgcattaacatccccggggct
tacgagtgcggctcttgccctcctggcttcttggcgcggggaggccagtgtgtagatgcg
gacgagtgccaggatcaacgcgtgtgtaccaggggtcactgcgtgaacaccgacggctcc
tttatctgtcaatgcgggccgggcttcagggtgtctctgtctggtgaccagtgtgacgat
gtggatgaatgttcagaagacgaccggccctgcaagtccatcggggagtgcgttaataac
atgggctcctacacatgtacctgtccgcgagggtatcgacagatggacggcaccagctgc
acagatgttgacgagtgtgtcgatgagccggaactgtgctcgccccacggccaatgcctc
aacacagagggatcctatgcgtgtgcgtgtgggagtggattcaccgctcctctcgataca
ccctcctgtgacgatatcgatgagtgcggactcaatgagactttgtgtagtcctcatggt
ttttgcgagaatagattgggttcattccgatgcctctgtgacccgggctaccaggaaaat
caagatggccaaagctgtgtggacgttaatgagtgcgagctgctgaatagtgtctgtgga
gaagctcagtgtctaaacactgacggttccttcgtctgcacgtgtcccagcggccaagag
tataatgtgatggtcgccagatgtgagcccgttcccacagtctcacccatagagcgtaag
gagtgctacttccatctgaatgatgagaacttgtgcgagagtgtgcttaccagccacgtc
accttgcaagagtgctgctgcacgctgggagctggctggggggacaactgtgaggtttat
ccctgtcctgtcaatggcacagaccagttcaaccagatgtgtccatcgggaaaaggattt
atcccaagtggagatttgctttatgaagtcccaacagccgagagttacaaaaatgcagat
gagtgcacgctgttcggccaggaggtgtgtaaaggaggcttctgtcaggacacggtgggc
agctatgagtgttactgcaagacgggacaagactacgaccctgcaaaactggagtgcaga
gacataaatgagtgcctggatgagtcagtgtgcgttggagcagagtgtttgaacacggaa
ggctcctacatttgtttctgtaatcatcccatggtgttggatgccaacagtaacagctgc
atctttgtccctgatgcggctgagcaacacgaggtggggcagatggacttccaggggatc
tgctggcagaaggtgacagactccatgtcgtgcactctgccgctgggcgacgacaggaag
accacgtttaccgagtgctgttgtctctttggagaggcctggggaatggactgtgcattg
tgccctcccaaaaacacagcggattacgcctccatgtgtaacctggccgggcggcatcct
tacggccgtgacgcccttgtcgccggtgcgctccatgaatatgaagtgagcctggactat
tcaccatcgccagacgacaatcctgccctgccgttttacgaccatgaggaatatccgttc
aaggcgttcgagggcttgcgagcagacgagtgcggcgtactgaacggctgcgaaaacggt
cgatgcgttcgagtgcaagagggtttcacctgcgaatgctttgacggttacacgctggac
ctgccccgcatggcctgcatcgatgtaaatgaatgttcagagctcaacgaccgcatgtcg
ctgtgtagaaatgccagatgcatcaacacggtgggttcgtaccgctgcgcgtgccttccg
ggattcactccctctgaaaaaccaaactattgcgtggagacagtgtcacggcaaacttca
gcgcacgcacagtga
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