Syngnathus scovelli (Gulf pipefish): 125979942 Help Entry 125979942         CDS       T08785                                  Name (RefSeq) TNF receptor-associated factor 2   KO K03173   TNF receptor-associated factor 2 [EC:2.3.2.27] Organism sscv  Syngnathus scovelli (Gulf pipefish) Pathway sscv04010   MAPK signaling pathway sscv04137   Mitophagy - animal sscv04141   Protein processing in endoplasmic reticulum sscv04210   Apoptosis sscv04217   Necroptosis sscv04621   NOD-like receptor signaling pathway sscv04622   RIG-I-like receptor signaling pathway sscv04920   Adipocytokine signaling pathway sscv05132   Salmonella infection sscv05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:sscv00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     125979942  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     125979942  09140 Cellular Processes   09141 Transport and catabolism    04137 Mitophagy - animal     125979942   09143 Cell growth and death    04210 Apoptosis     125979942    04217 Necroptosis     125979942  09150 Organismal Systems   09151 Immune system    04621 NOD-like receptor signaling pathway     125979942    04622 RIG-I-like receptor signaling pathway     125979942   09152 Endocrine system    04920 Adipocytokine signaling pathway     125979942  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     125979942   09171 Infectious disease: bacterial    05132 Salmonella infection     125979942  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sscv03019]     125979942    04121 Ubiquitin system [BR:sscv04121]     125979942 Enzymes [BR:sscv01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      125979942 Messenger RNA biogenesis [BR:sscv03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Stress granule specific factors      125979942 Ubiquitin system [BR:sscv04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     125979942 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING zf-C3HC4_4 zf-RING_5 zf-C3HC4_2 zf-RING_UBOX zf-RING_2 zf-RING_6 zf-RING_4 ADIP ATG16 Motif Other DBs NCBI-GeneID:  125979942 NCBI-ProteinID:  XP_049594814 LinkDB All DBs Position Unknown AA seq 520 aa AA seqDB search MSRIWMESIISLPGIPHNVLSVPMENKYKCQQCLQVLRKPVQAQCGHRFCVHCFKQLTSS GPKPCEACREEKIYEEPTSILNIDDAFPDNAASREIASLPAQCLNPGCAWKGSIKEYETQ HEGSCEMERVQCEACKDFLLRSEMEKHCERECEARILHCKYCKVSCSFKDIKAHDDVCPK FPMQCKDCGRKKIPRERYNLHLRLCNKPKCSCPFIELGCKYENNSGKLSDHEKNSTAEHL RLVLRQVLSVAPPQAEALPQAEALLLSDCQEDSGLGLYRAPEEGASSHEPTTDLDKKMNA LENIVCVLNREVERSAVTLEAFSQQHRLDQDKLENLNNKVQQLERSLAMRDLQLSETEQL VRELQFCTYDGIFVWKISDFARRRVDAVAGRTPTMFSPAFYSSKYGYKMCLRLYLNGDGT GRGTHLSLFFVVMRGRCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDISSTSFQRPVS EMNIASGCPLFCPLGKLAGKSPYLRDDTIFIKAIVDLTGL NT seq 1563 nt NT seq  +upstreamnt  +downstreamnt atgtcccgaatatggatggagagcatcatttcgttaccaggcattccccacaacgtgctg tcggtgcctatggaaaataaatacaaatgtcagcagtgtctccaggtcctcaggaagccc gtccaggctcagtgcggccaccgcttctgcgtacactgcttcaagcagctcaccagttcg ggcccaaagccatgcgaagcctgccgtgaggagaagatctacgaggagcccacctccatc ctcaacatcgacgatgcttttccagacaacgcggccagtcgagaaatagccagcctgccc gcgcagtgtttgaacccaggttgcgcctggaaaggatccatcaaagaatacgagacgcag catgaaggctcttgcgaaatggagcgcgtgcagtgcgaggcctgcaaggacttcttgttg cgctcggagatggagaaacactgcgagagggagtgcgaggcccgaattctccactgcaaa tactgcaaagtgtcttgcagctttaaagacatcaaggctcacgatgacgtttgccccaag ttccccatgcagtgcaaagactgtggcagaaagaagatcccgagagaaaggtacaacctt caccttcgattgtgcaataagcccaagtgttcctgtccttttattgaactgggctgcaaa tatgaaaataacagcggcaagctgagtgaccatgagaaaaatagcaccgccgagcacctg cgcttggtgcttcgccaggttctgtcggtggccccgcctcaagcagaggccttgcctcaa gcagaggccctgctcctcagcgattgccaggaggattcaggtctgggcctgtacagggct cctgaggagggagcctcgtcccatgagcccaccacagacctagataagaagatgaacgcc ctggagaacatcgtgtgcgttctgaaccgtgaggtagagcggagcgccgtgacgctggag gccttctcgcagcagcaccgtctggaccaggacaagctggagaacctgaacaacaaggtt cagcagctcgagcggtccttggcaatgcgcgacttgcagctgtccgagacggagcagctg gtgcgagagcttcagttctgcacctacgacggcatttttgtctggaagatctcagacttt gctcgccgtagggtcgacgccgtggcgggtcggacgcctaccatgttctcaccggcattc tactccagcaagtatggctacaaaatgtgcctgcgtttgtacctgaacggcgacggcacg gggcgggggacgcacctgtcgctcttcttcgtggtcatgcgggggcgctgcgacgcgctg ctcaagtggccttttagccagaaggtgacgctgatgctgctggaccagaacaaccgcgag cacatcatcgacgccttccgcccggacatctcgtccacgtccttccagcggcctgtgagc gagatgaacatcgccagcggctgtccgctcttttgcccgctggggaagctggccgggaag agtccgtacctgcgcgacgacaccatcttcatcaaggccatcgtggacctgacaggcttg taa

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