Syngnathus scovelli (Gulf pipefish): 125980427 Help Entry 125980427         CDS       T08785                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism sscv  Syngnathus scovelli (Gulf pipefish) Pathway sscv04115   p53 signaling pathway sscv04145   Phagosome sscv04148   Efferocytosis sscv04350   TGF-beta signaling pathway sscv04510   Focal adhesion sscv04512   ECM-receptor interaction sscv04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sscv00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     125980427   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125980427  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     125980427    04148 Efferocytosis     125980427   09143 Cell growth and death    04115 p53 signaling pathway     125980427   09144 Cellular community - eukaryotes    04510 Focal adhesion     125980427   09142 Cell motility    04820 Cytoskeleton in muscle cells     125980427  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sscv04131]     125980427   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sscv00536]     125980427 Membrane trafficking [BR:sscv04131]  Endocytosis   Phagocytosis    Opsonins     125980427 Glycosaminoglycan binding proteins [BR:sscv00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125980427 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 EGF_CA TSP1_ADAMTS EGF cEGF Laminin_G_2 TSP1_CCN Motif Other DBs NCBI-GeneID:  125980427 NCBI-ProteinID:  XP_049595442 LinkDB All DBs Position 14:complement(10909685..10916644) Genome browser AA seq 1172 aa AA seqDB search MMLHGIFLLSLLWSCEAAILAETRDDNSVYDLFDLVRVDKRHNGVTLVKGADPNSPAYKI LNAELIPPVPDNSFGDLIDSIQLERGFILLVNLKQSKRNRGSLLTIEKKDGSGPVLEIIS NGKANTLDVFYSTGNHQQLVSIEEAHLATGHWKNITLFFQDDRVKLLVGCDEINVSEMDE PIQKVLSAELADIARLRIAKGATRDKFMGVLQNVRFVFGTSLETILRNKGCENGAALTDV LTLDNPMNGSSPAIRTDYTGHKTKDHQSHCGYSCEEIAGLFKELRGLGVVVKHVTNELRK VSKDSAKIQDQIKNHSSVCIHNGIVHNDRDEWTVDDCTECTCQNSATVCRKISCPLIPCT NGTIPEGECCPRCGNPSDSAEDDWSPWSQWTRCSVTCGRGIQQRGRSCDRINSNCEGTSV QTRDCFPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGMDCQGEG RQTEICHKSPCPINGGWGPWSPWDTCTVTCNGGIQNRKRLCSDPVPKYGGKDCVGDATMS QVCNKQDCPIDGCLSNPCFSGAKCMSFPDGSFKCGRCPIGYKGDGITCKDIDECKEVPDA CYTYNGVHRCENTDPGYNCQPCPARYSGSQPFGRGVEQATAKKQVCKPRNPCQDGSHNCN KNANCIYLGVFSDSMFRCECKPGYAGNGYICGEDSDLDGWPNSDLLCVANATYHCKKDNC PTLPNSGQEDYDKDGRGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDTCDNCI FESNTDQTDTDNNGEGDACAVDIDGDGVLNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL EHNPDQTDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIANANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQKDSDGDGRGDVCKDDFDQDNVLDIYDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFVNTDR DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLVHRPKSGLIRVVMYEGKRIMADSGNI FDKTYAGGRLGLYVFSQEMVYFSDLKYECRDS NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgatgctgcacggcatctttctgttgtcgctgctttggagttgtgaggctgcaatatta gcagaaacccgtgatgacaacagtgtttatgacttattcgatctggtgcgggtagacaag aggcacaacggcgtgactttggtcaaaggagctgacccgaacagcccggcatataaaatc ctgaatgcagaattgatcccgccggtccctgacaactcctttggggaccttatcgactcc atccaattggagaggggtttcatcctcttagtcaacctgaaacagtccaagaggaacaga ggaagcctcttgaccattgagaagaaagacggctcaggtcccgtgttggagatcatctcc aacggcaaggccaatactttggatgtcttctactccaccggcaaccaccagcagctggtg tccatcgaggaggctcacttagctacgggacactggaagaacatcacactcttcttccag gatgaccgtgtgaagctcttggtaggctgcgatgaaatcaacgtgtccgagatggacgag cccatccaaaaagtgttgtccgcggagctggcggacatcgccaggctcaggattgcaaag ggagcaactcgggataaatttatgggagtgcttcagaatgtgagattcgtctttgggaca tccctagagaccattcttagaaataagggatgcgaaaatggagctgccttaaccgacgtc ctgactctggacaacccaatgaacggctccagccccgccatcaggaccgactacactggc cacaaaaccaaagatcatcaatcccactgcggctactcctgcgaggaaatcgcaggcctg ttcaaggaactccgaggtctcggtgtggtggtgaagcacgtgaccaacgagctgcgtaaa gtgtctaaggacagcgccaagattcaagatcaaatcaagaatcacagtagtgtttgcatc cacaacgggattgtgcacaacgatcgagacgagtggactgtggacgactgcaccgagtgt acctgccagaactccgccactgtgtgccgaaaaatctcctgtcctctgattccctgcacc aatggcaccattccagaaggagagtgctgccccagatgtggaaatccaagtgactccgct gaggacgactggtccccttggtctcagtggacccgctgttccgtgacttgtggtagagga atccagcagcgtgggcgctcttgcgatcgcattaacagtaactgcgagggcacctcagtc caaacccgagactgcttccctcaggaatgtgacaaacgattcaaacaagatggagggtgg agccactggtctccttggtcttcatgctctgtgacctgtggagaaggggtcatcacacgt atacgtctctgcaactctccaacaccccagatgggcggcatggactgccagggagaagga cgccaaactgaaatctgccacaagtcaccctgtcctatcaatggcggttggggaccttgg tcaccatgggacacgtgcaccgtgacatgcaacggaggaatccagaaccgtaaacgtctc tgctccgaccccgttcctaaatacggtggcaaggactgcgttggtgacgccaccatgtct caagtgtgcaacaaacaggactgtcccattgatggttgcctctccaacccatgcttctct ggcgccaagtgtatgagcttccccgatgggtcattcaaatgcggcaggtgtccgatcggc tacaaaggcgacggcatcacctgcaaagacatcgatgagtgcaaggaggtccccgacgct tgctatacatacaacggagtccatcgttgtgagaacacagatccaggttacaactgccag ccgtgcccagctcgttactccggttctcaacccttcggaagaggagtggagcaagcgacg gcgaaaaaacaggtttgcaaaccacgtaacccatgccaggacggtagccacaactgcaac aagaacgccaactgtatttatttgggcgtcttctccgactccatgttccgctgtgagtgc aaaccaggctatgctggcaatggttatatttgtggagaggattctgacctggatgggtgg cccaactcggacttgttatgtgtggccaatgccacctaccactgcaagaaggacaactgc cccacccttcccaattctggtcaggaagattacgacaaggatggccgtggtgatgaatgt gaccacgatgatgacaatgatggtatccctgatgatagggacaactgcccgagagtgtac aaccctgctcagtatgacgccgacagggatgacgtaggtgacacatgtgacaactgtatt ttcgagtcaaacactgaccagaccgacacggacaataacggagagggggatgcctgcgcg gtagacattgacggtgatggcgttctgaacgagaacgacaactgcccatatgtttataat gtggatcagagggatacggatcgggacggtgtgggagaccactgcgataactgccccctc gagcataaccccgatcagactgactcagattcggatctcgtgggagacaagtgtgacaac aaccaggacattgatgaggatggccatcagaacaatttggacaactgcccgtacatagca aacgccaaccaggctgaccacgacaaggacggcaagggtgatgcctgtgaccacgatgac gataacgacggcattcccgatgacaaagacaattgcaggctggccttcaaccccgaccag aaggactctgatggtgatggccgaggcgatgtgtgcaaagacgatttcgaccaagacaac gtcctggatatttatgacgtttgcccagagaactttgccatcagtgaaaccgacttccgc cgtttccagatggttcctcttgatcctaaaggcacttctcagattgatcccaactgggtg gtcagacatcagggcaaggagttggtgcagactgtcaactgtgacccaggcatcgccgtt ggtttcgatgagttcagcgccgtcgacttcagcgggaccttcttcgtcaacacagaccga gacgacgattacgccggttttgtgtttggctaccagtcaagttctcgattctacacagtc atgtggaagcagatcacacagacctattggtctcacactcccacacgagctcaaggctac tctggcctttccatcaaagtggtcaactctaccaccggtcctggtgagcacctgaggaac gcactgtggcacaccggagacacacccggacaggttcgtactctgtggcacgacccaaag aacatcggctggaaggacttcaccgcctacagatggcaccttgtccatagaccaaagagt gggcttattagagttgtgatgtacgagggcaagagaatcatggcagactctggaaacatc tttgacaaaacctatgccggagggcgactagggttgtacgtcttctctcaggagatggtg tacttctctgatcttaaatacgaatgtagagattcataa

DBGET integrated database retrieval system