Syngnathus scovelli (Gulf pipefish): 125980732
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Entry
125980732 CDS
T08785
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125980732 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125980732 (c9orf72)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
125980732 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
125980732
NCBI-ProteinID:
XP_049596161
LinkDB
All DBs
Position
14:15080117..15084486
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AA seq
462 aa
AA seq
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MSCGCPPQSPAVAKSEVAIEGECPLLAATFAYWDNILGPRVHHIWAPKGDPAMFLSDGDV
TFLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSVILPQT
ELAFYLPLHTICVERLKHAIRKGRIWMQKGYNIVAVLSLEIVPVMELLASMKTHSVPEDI
DIKDTMLNDDDIGDSCHEDFLHKAISSHLQTCGCSIVVGSNPEKVNKIVRTLCLFLTATE
KKCSRLCKADSSFKYDTGLFVQGLLKDSAGSFVLPFRQVLYSPYPSTHIDVDINTVKQMP
PCHEHTYHQRGYMRSELNTLWKSDSEEDIAPDTVIATDDTFTPDLNIFQDVMHKDTLVKS
FIDEVFMLRPGLSLRSTYLAQFLLLLHRKALTLLKYIEDETQKGKKPFRTLRNLKTDLDL
MVEGDLNIVMAFAEKLRAGLHSFVFGKPFYTSMQERDVLMNF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgcgggtgtccaccccagtcacctgccgtggcaaagtctgaagtagcaatcgag
ggagaatgcccactgctggctgccacctttgcttactgggacaatatcctaggtcctcgc
gtccatcacatctgggcaccaaagggtgatcctgccatgttcctcagcgatggagacgtg
accttcttggccaatcacacattaaatggagagattctgcgcagtgccgaatgtggcgcg
gtggacgtgaagtttttcgtgctggcagagaagggtgtcatcatcgtgtcgctcatcttc
gacggtgagctcaagggggacaaaaacacctgcgccttgtccgttattctgccgcagacg
gagctggccttctacctgcctttgcacaccatctgtgtggagaggttaaagcatgctatc
cgcaagggacgcatttggatgcaaaagggctacaacattgtcgcggtgctgagcttggaa
atagttcccgttatggagctgctggcgtccatgaaaacacacagtgtgcctgaagatata
gatatcaaagacaccatgctaaatgatgatgacattggagacagctgccatgaggatttc
ctccacaaggccatcagctctcatctccagacttgtggttgttcaatagtggttggaagc
aacccagagaaagtaaacaagattgtgcgaacgctttgcctctttcttactgccaccgag
aagaaatgttctcgcctttgcaaggcagactcatccttcaaatatgacaccggccttttt
gttcagggtctgctcaaggactccgccggcagctttgtactgcccttccgccaggttctc
tactccccttacccgagcacacacattgacgtggacatcaacacggtcaagcagatgccg
ccgtgtcacgagcatacttaccaccaacgtggctatatgcgctctgagctcaatacgctt
tggaagagcgacagcgaagaggacatagctcccgacaccgtcatcgccaccgacgacact
ttcacacccgacctgaatatatttcaagatgtcatgcacaaagacactttggtgaagtcc
ttcatagatgaggtgttcatgctgcggcccggcctttccctgcggagtacctacttggct
cagttcctcttgctcctccacaggaaagccctcacactgctcaagtacatcgaggatgag
actcaaaaggggaaaaagcctttccggaccttgcgcaatttaaagactgacctggatctg
atggtggaaggagacctgaacattgttatggcctttgctgagaagttgagagcaggacta
cactcatttgtgtttggaaagccattctacacaagcatgcaggaaagagatgttcttatg
aacttttga
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