Syngnathus scovelli (Gulf pipefish): 125982493
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Entry
125982493 CDS
T08785
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X2
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125982493 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125982493 (smg6)
03032 DNA replication proteins [BR:
sscv03032
]
125982493 (smg6)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125982493 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
125982493 (smg6)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
125982493 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
125982493
NCBI-ProteinID:
XP_049599077
LinkDB
All DBs
Position
15:9138563..9149598
Genome browser
AA seq
1505 aa
AA seq
DB search
MKFIWTFAPDSNWQKFVCVCVCVCVCVRVRLCVCECVCACVCTCVCGHACVRMRYWRAED
DHAAKKQRRRPDLQRYQRGPGQGCQRRDSEETENTASDRRGSLPPDLRESKPRNIKKNLP
KHADHRMRGDGSNVATVESQAARDKDVPESHQENSEPAGAAKSKKARKPDREFYQPGSRR
TVAGKDCDRVRELDKPPPRNHIAKQREAKGKNQGEKSTEENAKSIETNGNEGSQAVVEEL
VSKVEKLNFEGKASQQDGDRGKSIDQKMREDAEKRGNRHRRGGEKSWNVVSGHAEREKDR
SQGHVANQPAEAHPNKGRESTRRSRNSKNGGSREADRGAPTQRNGERKGRPGESSKWDGA
ASASKRYSELDIRRPRRRTYSSSSASSAAGPDAVSRPDRPRRETRGLRRHASWTSSADSA
EWGETSDAANCGRSHATDEAGDSRGSAKGAEGRGRGIPRLSTEKKQAASGDRHKHGPAPR
GRGGGILVLPSRGDMAKPLESGRRMLFGSARGAAPRARGGRGGGARRLWDPNNPEQKPAL
APAGRQSLPQAVCPQAVYPQAAYVQLHFLDTDDEVAGSPPVAPAAAYYKFQKSDNPYCCQ
PAAANQRCPFPYQVANGAYAPAHLYRGYAQADDTLTVEEAERRARGELGRMLRAVDAQEV
QLSNLLSRDRLSPDSLERMAQLRAELLAVYERVVLSDIELADSQSVDQALWKNVFYQVIE
RFRQLLKDAAEPLAIREALLALLNEGAHFFETLLQKLQTVYQFKLEDYMDGMAVRTRPLR
KTVKYALISAQRCFICQGDIARYREQASDSANYGKARSWYLKAQQIAPKNGRPYNQLALL
AVYTKRKLDAVYYYMRSLAASNPILTARESLMSLFEEAKRKTEQLERRRRQNQQDGGSLG
PVVQGRAGLEDGARSELWLRPGGHGDSEQDGELSGLSASDLNRRFILSFLHAHGKLFTKV
GMESFPRVSRRVVQEFRALLQHRPSLLGSTQLLQIVTINMFTIHNALIRGGGEEEGGGGE
CRSMLQEQSTALGLAMFALLVQRCTQMLTDTLAASTSDVERDDNEDEPDAPLRVSDFPAD
LRELLPSIKVWSDWMLGHPDQWNPPPRGIDDSPDVWQCLACLCNVLARVDHGEVPLYKVD
TDEVEGDEELMLLQLKEDRLLAGFIPLLAAPQEPCYVDRRTDTPSCVPRLQAIAADCKRV
TVLKYFLEALCGQEEPLLAFKGGKYVSVALAPPSPDARAGRDLRSDKEVDAVIVESSPSA
SEGEADYKDNADQEAVAGGGESDIRQLKARHHALTNKLVQQQKRREKIQAVLQTSGRLQL
EVRPLFLVPDTNGFIDHLAALKKLLCCGSYIVVVPLIVITELDGLAKGQEVLGGGGGHVV
VAAHAHGVQEKARQAVLFLEQAFERREPRLRALTSRGTQLESIAFRSEDTSGQQGNNDDI
ILSCCLHYCQDKGKDFMPDQRNGVTVRLHREVVLLTDDRNLRVKALTRNVPVRDIPAFLN
WAKVG
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatctggacctttgcacctgactctaattggcaaaagtttgtgtgtgtatgt
gtgtgcgtgtgtgtgtgtgtgcgcgtgcgtttgtgtgtgtgtgagtgtgtgtgtgcgtgt
gtgtgtacatgtgtgtgcgggcatgcatgcgtgcgcatgcgttactggagagcagaggac
gatcacgcagccaagaagcaacggcgccgtcctgacttgcagcgctaccagcgagggccg
ggacagggatgtcaacgccgcgacagcgaggagaccgaaaacactgcaagcgaccgccgt
ggatccctgccgcctgacttgcgagaatccaaacctagaaacatcaaaaagaacctgccc
aagcacgctgaccacaggatgcgaggcgatggcagtaacgttgccactgtcgaaagccag
gccgctcgtgacaaagacgtgcccgaaagccaccaagaaaattcggagcccgccggagcc
gccaagtcaaagaaagcccgcaaacccgaccgggaattttaccagcccggaagccgccgg
accgtggcggggaaagactgtgacagggtgcgagagctggataagcctccgccgagaaac
cacatagccaaacaaagagaggcaaagggcaagaatcaaggcgaaaagagcactgaggaa
aatgcaaaatccatagagacgaacgggaatgaaggaagccaggcggtggtggaggaactg
gttagcaaagtggaaaagctcaactttgagggcaaagcatcccagcaagacggtgacaga
ggcaaaagcatcgatcagaaaatgcgggaggatgccgagaagaggggcaatcgtcacaga
agaggcggcgagaagagctggaatgttgtctcgggtcacgctgagcgggagaaagacaga
agccagggccatgtggccaatcaaccagcagaagctcacccaaacaagggacgagagagc
accagaagaagccgcaacagcaagaacggtggcagcagagaagctgacagaggtgctccg
acgcaaaggaacggcgaacgcaaaggccggccaggcgagagcagcaaatgggacggcgcc
gcatccgcctctaaacgctattctgaattggacatccgccgcccgcgacggcgcacctat
agcagcagctcggctagcagcgccgccggcccggatgccgtcagcaggcccgaccgtccc
cggagagaaacacgcggcttgcgccggcacgccagctggacctcctcggccgactccgcc
gaatggggtgagaccagtgacgcggccaattgcggacgctcgcacgccacagacgaagcc
ggggactcccgtggcagcgccaagggggccgaaggcagagggcgaggaatccccaggctc
tccacagaaaagaagcaggccgcctccggggaccgccataagcacgggccggcccctcga
ggccgaggcgggggtatcctggtgctgccgtcccgcggtgacatggccaagcctctggaa
tccggccggcggatgctgtttggcagcgctcgaggagccgcacccagggctcgaggaggt
cgcggcggaggcgccaggcgcctctgggaccccaacaatccagagcagaaaccagcactg
gctcctgctggtcgccagtcactcccgcaggccgtctgcccgcaggccgtctacccgcag
gcggcgtacgtgcagctgcactttctggacacggatgacgaagtggcggggagccctccg
gtggcgcccgccgcagcctactacaagttccagaagtcggacaacccctactgctgccag
ccggccgccgccaaccaacgctgccccttcccctaccaggtggccaacggagcgtatgcg
ccggctcacttgtaccgaggttacgcccaggctgacgacaccttgacggtggaggaggcg
gagcggcgggccagaggcgagctgggccgcatgctccgggcggtagacgcccaggaagtt
cagctcagcaacctgctgtcccgagacagactcagccccgacagcctggagcgcatggcc
cagctcagggcggagctgctggccgtgtacgagcgcgtcgtcctgagcgacattgagttg
gccgattcgcagagcgttgaccaggcgctgtggaagaacgtcttctaccaggtcatcgag
cgctttcgccagctgctaaaggacgccgctgagccgctggccatccgtgaggcgctgctc
gccctgctcaacgagggggcgcacttttttgagactctgctccagaagctgcagacggtc
taccagttcaaactggaggactacatggacggcatggccgtcaggactcggccgctgcgc
aaaacggtgaagtacgccttgatcagcgctcagcgctgtttcatctgtcaaggagacatc
gctcgctaccgggaacaagccagcgactcggccaactatggaaaagctcgcagctggtac
ctgaaagcgcagcagatcgcccccaaaaatggccgcccgtacaaccagctggccctgctg
gccgtctacactaagcgcaagctggacgccgtctattactacatgcgcagcctggcggcg
tccaatcccatcctgacggccagggagagcttgatgagcctgttcgaggaggccaagcgc
aagacggagcagctggagcgtcgcaggaggcagaaccaacaggacggcggctccttgggg
cccgtggtccagggccgcgccggacttgaggatggggcacgctctgagctctggctgcgc
cccggcggacacggcgactcggaacaggatggagagctcagcggcctcagcgccagcgac
ctcaacagaagatttatcctgagtttcctgcacgcgcacggaaagctcttcaccaaagtg
gggatggagtcattccccagggtgtcgcggagggttgtgcaggagttccgtgcgctgctc
caacaccgcccatcactcctgggcagcacgcagctgttgcagatcgtcaccatcaacatg
ttcaccatacacaacgccctcattcgaggcggtggtgaagaagaaggaggaggaggagag
tgtcgctcgatgctgcaggagcagagcacggcgctgggcctggccatgtttgcactgctg
gtgcaacgctgcacacagatgctcactgacacactggcagcctccacgtctgacgtcgag
cgggacgataatgaggacgaaccggatgccccactgagggtctcggatttcccggcagac
ttgcgggagctcctgcccagcatcaaggtttggtccgactggatgctcggacacccggac
cagtggaacccgccgcctcgcggcatagacgacagcccagatgtgtggcagtgcctggcg
tgcctttgcaacgtgctggcgcgcgtggatcacggcgaggtgccgctctacaaagtggac
acggacgaggtggagggcgacgaggagctgatgctgctgcagctgaaagaggacaggctc
ctcgccggtttcatcccactgctggccgcaccgcaggagccctgctacgtggaccggcgc
accgacacgccttcatgcgttcctcgccttcaggccatagccgccgactgcaagcgggtg
acagtgctcaagtacttcttggaggcgctgtgcggacaggaagaacctctgctggccttc
aagggcggcaaatacgtctccgtggcactagcccctccttctccggacgcccgtgccggg
cgagacttgcgatcagacaaagaggttgacgctgttatcgtggagtcttcgccgtcggcg
tctgaaggcgaagcagactacaaggacaatgccgaccaggaggcggtggccggaggcggg
gagagcgacattaggcagctgaaggcgcggcaccacgccctcaccaacaaactggtgcag
cagcagaagcgccgcgagaaaatacaagcggtactgcagaccagcgggcggctgcagctg
gaggtgcggcccctcttcctggtgcccgacactaacggcttcattgaccacctggcggcg
ctcaagaagcttctctgctgcggaagctacattgtggtggtgccactcattgtgatcacg
gagctggacggcctggcaaaaggccaggaggttttgggaggaggaggagggcacgttgtg
gtggcagcgcatgcgcacggtgtgcaggagaaggctcgccaagccgtgctgttcctggag
caggcctttgagaggcgcgagccgcgattgcgggcgctcaccagcagggggacccagctg
gagtccatcgccttccgcagcgaagacacctcaggacagcagggcaacaacgatgacatc
atcctgtcctgctgcctccactactgccaggacaagggcaaggactttatgcctgaccag
agaaatggggttacagtgcgtcttcatcgtgaggtggttctcctcactgatgaccgcaac
ctgcgcgtcaaagccttgacgcgcaacgtccccgttcgagacatcccggccttcctcaac
tgggccaaagtgggctga
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integrated database retrieval system
