Syngnathus scovelli (Gulf pipefish): 125983122
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Entry
125983122 CDS
T08785
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125983122 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125983122 (smcr8a)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
125983122 (smcr8a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
125983122
NCBI-ProteinID:
XP_049600021
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Position
16:1162224..1167310
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AA seq
888 aa
AA seq
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MDDETTVISTMIGSPDVVAFTKEDDDDGQSTPDPWAIPEEFSIPLHPLADSNPWAKTSYA
KFTKDFILISEFSEQVGPQPLLTIPDDPKVCGTFDLNYFSLRIMSVDYQASFVGHPPGSG
YPRLSFVEDSRVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYVSADERKIMLQFQE
LSGRFSKASECLKAGNRRAFAKELQRKLRDLEYTHSVLQREEGLQREAGPQCMYSPHAVE
KANELANVEKSIYEHRDLLRQISSYHHRPRRDPQAVTCHKCMSECEELFGKYAELAKPSS
GADAGEKQNGHAGQVDIGEEDYERVARRPSYTPQLIKAKSAKCFDKRLKTLQELCDDTFY
QATVELLKETERSFRGDLCYLHTRRLDLALRRKQSIMNFLFEEDLCEDDYDDLDGRATLR
PLCAVNHAVDNSKLINPVVLGPEPPKLLDFASETSHTGDFKLEEDHLKTSCSDQESETQK
CSEKPTGNCGNQASLKPEVLDAESDSTPDCDHKTHLDGDATDEDGEPKVLLEEPRKEGRK
KDSTFVPMDTACCMTHEGFLDNPPDAVPRLTAHLQNAQILVVNQEPQALLPLQDDYAVGS
PCSENLTTGLLGDAVSHTSAEDGSDCTTCTSTGSDWTASPVGNGGLLTLRQKKKAGQGAL
RFVRQYPFAIQALWSLLSGRTLVVLGADEARVRRLVSALALFVPAPGRCGERVQAWLACP
FSLTDLHRWKLIGLQRVASPAGSSMLYSLSRYSRYISILDADQKTLRCPPYDGKLLANMA
DHRTYVRRGSTYFLHVQSTLCHLAAKAFLFTFTHHLHLPVNTTEGMEGVLARRTFFLQEQ
LGLGEEDRQIVLYLSYLITQHYLHASDGRTAAAPSFNFTYTSSVLYKI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgagaccacagtgatcagcactatgataggctcacctgacgtggtggctttc
acaaaagaggatgatgatgatggtcagtccactcctgacccatgggctattccagaagag
ttctccattcccctccaccctctggctgactccaacccttgggccaaaacctcatacgct
aagttcacaaaagacttcatcctcatttcggagttctccgagcaagtgggtcctcagcct
ctcctcaccattcctgatgaccccaaagtctgtggcacttttgatctcaactacttctcc
ctacgcatcatgtcagtggactaccaggcctccttcgtggggcatccgccaggcagcgga
taccctcggctcagttttgtggaggactccagggttgtcctgggtgactctaaggagggc
gcctttgcctacgtccatcaccttacactgtacgacctggaggcgaggggctttgtgcgt
cccttctgcatggcgtatgtttcagcagatgagaggaagatcatgttgcagtttcaggag
ctgtccgggcgcttctcgaaggcctcggagtgcctgaaggccggcaaccgcagagccttc
gccaaagaactccagaggaagcttcgagacctagagtacactcactctgttctccagagg
gaggagggcctgcagagagaggcagggcctcagtgcatgtactcgcctcatgctgtggaa
aaggccaacgagctcgccaacgtggagaagagcatttacgaacacagagaccttctgaga
cagatcagctcgtaccatcatcgtccccgccgagaccctcaggccgttacgtgtcacaag
tgtatgagcgagtgcgaagagctcttcggcaagtacgccgagctagctaagccttcgagc
ggcgctgacgcaggggagaaacaaaatggtcacgcgggccaagtggacattggcgaggaa
gactacgagcgtgttgcacgcaggccgtcttacacgccgcagctgattaaagcaaagtca
gccaaatgtttcgacaagcgcctcaagaccctccaagagctgtgcgatgacaccttctac
caggccaccgtggagctcctgaaggagacggaaaggagtttccgaggcgacctgtgctac
ctgcacacacgtcgcttggacctagccctccgcagaaagcagagcattatgaactttttg
tttgaggaggacctctgtgaagacgactatgatgatctggatggaagggcgacattacga
ccactttgtgctgtgaaccatgctgtagacaactccaaactcatcaatccagtcgtgctg
ggaccggaacctccgaagcttttggactttgcctctgagactagccatactggagacttc
aagcttgaagaggaccatctcaagacttcctgttccgaccaggaatcggagacccagaag
tgctctgagaaacctactggaaactgtggcaaccaggcaagcctgaagccggaagttctg
gatgctgagtccgactcgaccccagactgtgaccataaaactcatctggatggtgatgct
actgatgaagacggggaacccaaggttttgttggaggaaccaaggaaggaaggacgcaag
aaggactctacttttgttccgatggataccgcatgctgtatgactcacgaaggttttctg
gataatccgcctgatgcggtgcctcgtctcaccgcccacctgcagaatgctcaaatcctg
gtggtcaaccaggagccccaggccctacttccactccaggatgactatgctgtaggatca
ccatgctcagaaaacctcacaaccggactcctcggagatgccgtgtcccatacatcggcc
gaggacggctcggattgtaccacgtgtacatccaccggttccgattggaccgcttctcct
gtcggcaatggggggttgctgaccttgcgtcagaagaaaaaggccggacaaggggccttg
aggtttgtgcgacagtacccctttgctatacaggctctgtggtctttgctgagcggcagg
acgctggtggtgctcggcgccgatgaggccagagttcgccggctggtttctgctctagcc
ctctttgtacctgctccagggaggtgtggagagcgagtccaggcgtggctggcctgccct
ttcagccttacggacctgcacagatggaaacttattggattgcaaagagtggcatctcct
gccggttccagcatgctgtactcattgtcccgctacagccgctacatctccatcttggac
gccgaccagaagaccttacgctgtccaccttatgatggcaaactgctagccaacatggct
gaccaccgcacctacgtccggcgcggttccacctacttccttcacgtccagagcacactg
tgtcacctggcggccaaggcctttctgttcaccttcacccaccacctccacctgcctgtc
aacaccacagaggggatggaaggcgttctggcccgacgcaccttcttcctccaggagcag
ctgggcctgggagaggaggacagacagatagtgctctacctcagctacctgatcacacag
cactacctgcacgcctctgatggccgcaccgcagcagcgccttcttttaatttcacctac
accagcagcgttttatacaaaatctga
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