KEGG   Syngnathus scovelli (Gulf pipefish): 125986686
Entry
125986686         CDS       T08785                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010  MAPK signaling pathway
sscv04060  Cytokine-cytokine receptor interaction
sscv04150  mTOR signaling pathway
sscv04210  Apoptosis
sscv04217  Necroptosis
sscv04350  TGF-beta signaling pathway
sscv04620  Toll-like receptor signaling pathway
sscv04621  NOD-like receptor signaling pathway
sscv04622  RIG-I-like receptor signaling pathway
sscv04625  C-type lectin receptor signaling pathway
sscv04920  Adipocytokine signaling pathway
sscv05132  Salmonella infection
sscv05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    125986686 (tnfa)
   04350 TGF-beta signaling pathway
    125986686 (tnfa)
   04150 mTOR signaling pathway
    125986686 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    125986686 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    125986686 (tnfa)
   04217 Necroptosis
    125986686 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    125986686 (tnfa)
   04621 NOD-like receptor signaling pathway
    125986686 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    125986686 (tnfa)
   04625 C-type lectin receptor signaling pathway
    125986686 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    125986686 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    125986686 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    125986686 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:sscv04052]
    125986686 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:sscv00536]
    125986686 (tnfa)
Cytokines and neuropeptides [BR:sscv04052]
 Cytokines
  Tumor necrosis fators
   125986686 (tnfa)
Glycosaminoglycan binding proteins [BR:sscv00536]
 Heparan sulfate / Heparin
  Cytokines
   125986686 (tnfa)
SSDB
Motif
Pfam: TNF DUF6338 AgrB
Other DBs
NCBI-GeneID: 125986686
NCBI-ProteinID: XP_049606452
LinkDB
Position
19:236357..239865
AA seq 266 aa
MNDIMGLPPEDLTAVIKAALCNLTVNKPVDTESKKLTRKAAKRGAKLTMAIWAFTLFLAA
AAAAAAAATFLIFNMHTKKPAGRDDGSFDIHHTLRQLSQRADAIRAAIHLTGQYNPDFAN
SVQWMNQVDPSHSQGGLELKDNQIIIPEAGLYFVYSQVSFRVSCRMDDADADAGPATSMV
HLTHRVRRWSSSFGDDEYRTILHSVRTACQKTADGDGEQVGGWYSAVYVGAVFNLNRGDR
LKTVTEKMLPNLEEEAGKTFFGAFAL
NT seq 801 nt   +upstreamnt  +downstreamnt
atgaatgatatcatgggacttcccccagaggacctcacggctgttataaaagccgctctg
tgcaatctgacagtcaataaacccgtggatacagaatcaaagaagttgacaagaaaggct
gccaaacgtggcgcaaagcttaccatggccatttgggctttcacattattccttgctgct
gccgcggccgccgccgccgccgccacttttctcatcttcaacatgcacaccaagaagccc
gccggacgagacgacggcagttttgatattcatcacactctgcgtcaactctcccaacgg
gccgacgccatcagagctgccattcacttaacaggacagtacaatcctgattttgccaac
tcggtgcaatggatgaatcaggtggacccatcccactcgcaaggaggtctggagctcaag
gacaatcagattatcatccccgaagccggcctctactttgtttacagtcaagtctcattt
cgggtcagttgccgcatggacgacgccgacgccgacgccgggccggccacgtccatggtt
cacctgacgcatcgagtccgacgctggtccagctcgttcggcgacgacgaataccggacc
atcctgcactcggtccggaccgcctgccaaaaaacagccgacggcgacggcgagcaagtg
ggcggctggtactcggccgtgtacgtgggagccgtcttcaacctgaacagaggagacagg
ttgaagacggtgacggagaaaatgctgccaaatctggaggaagaggccggcaagaccttc
tttggcgcctttgccttgtga

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