Syngnathus scovelli (Gulf pipefish): 125988348
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Entry
125988348 CDS
T08785
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125988348 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125988348 (lig4)
Enzymes [BR:
sscv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125988348 (lig4)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125988348 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
125988348
NCBI-ProteinID:
XP_049609405
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All DBs
Position
2:10634185..10640037
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AA seq
910 aa
AA seq
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MEETSKSAAADQSSVVAAQVPFLHLCNTLEKIQRLKLRPEKSKTLGDFIESWRTFHCALH
KDDPKTTDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIDVLCLPKNGPEANKLLNYRA
PSSSQGESGDFAGMAYFVLKKRCTSQGQLSIKEVNDFLDSVAINNASKKKDLVRKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLSKVCEQLHDPAVS
LSDVSIGLFSAFKPMLAAVANIGNVEKKMGNSPFYIETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGASPLEGSLTPHIHNVFQKHVVNCILDGEMMAYNPTAKTFMQKGNKFDIKRL
MDDSELQTCFCVFDVLFVNSQKLGKETLKKRYEILQTIFTPLTGRIHLVQKMEARSTQDV
VNSLNDAIDQREEGIMVKDPSSFYKPDKRGEGWLKIKPEYVGGLMDELDVLIVGGYWGKG
RRGGMMSHFLCAVAEAPKPGEKPSVFHSLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PANILCATEKPEVYIEPRNSVILQVKAAEIVVSDMYKTNCTLRFPRIEKIRDDKEWHQCI
TLAELEQFRGKASGKLFSRHLDIAAAGQPQRKRPKLPAKPKKAVSDLYKQQDLSGVTKET
DMFEDVEFCILNGMEDHPKAELEKGVARCGGIVVQNPGPDTYCVIAGLENMRVKNLILSN
QHDVVRASWLLECLEQKGFVPWQPRHMIHMSPSTKEHFARSYDRYGDSYFQDTDEQQLRE
VFERTGRMESSTAVDVCQVEERYGWGDLPTSMFRPFTVYMDDYADINDPATAISASCLDI
RAMEFRYHGGTVVDRLEEGVSHVVIAAETRLEDLKRLRRSFRKKFKIVKDTWVTDSIGAG
HLMNDDNYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacgtccaaaagcgctgcagctgaccagtcttctgttgttgctgctcaagtc
cccttccttcacctgtgtaatactttagaaaaaattcagagattgaaactgcgtccagaa
aagtctaagaccctaggggatttcatcgagtcatggagaacatttcattgtgcactgcat
aaggatgatcccaaaacaaccgactctttctacccggcaatgcgtctcattgttccctca
tttgagcgagagcgaatggcctacggcatcaaagaaaacatgctggctaaactttacatt
gacgtattgtgcctcccaaaaaacggtcctgaagccaacaagctattaaactaccgcgct
ccgagctcttctcaaggagagtctggagactttgccggcatggcgtactttgtgctcaag
aaacgctgcaccagtcaaggacagctcagcatcaaagaagtcaatgactttctggattcc
gtcgccatcaacaatgcgagcaagaagaaagaccttgtgagaaaaagtctgctgcacctc
atcacgcaaagctcggcgctggagcaaaaatggctcatcaggatgattctgaaggatatg
aagcttggcatcagcaaggaaacggtcctccaagtcttccacccggatgccgctgagctc
tacaatgtcaacacggacctcagcaaagtgtgtgagcagctccacgaccccgctgtgtct
ttgagtgatgtttccattggacttttctccgccttcaaacccatgttggccgccgtcgct
aacatcggcaacgttgagaagaagatgggaaacagccctttttacattgaaaccaaacta
gacggcgagcgaatacaactccacaaggatggcgacgtttacaagtacttcagtcggaac
gcctttgaatatacacagcagtttggcgcatctcctttggagggttccctgacacctcac
atccacaacgtatttcaaaagcacgttgtcaattgcattctcgatggggagatgatggct
tacaacccgaccgccaagacttttatgcagaaaggcaacaaatttgatatcaagagactg
atggacgattcagagttacagacctgcttctgcgtctttgacgtgctgtttgtcaattcc
cagaagcttggcaaggaaacgctgaagaagcgctacgagatcctgcagacgatttttact
ccacttaccggcaggattcacttggtgcagaaaatggaggcccgaagcacgcaggacgtg
gtgaattctctcaatgacgccattgaccaacgcgaagagggcatcatggtgaaagatccg
tcatccttctacaaaccagacaagcggggagaaggctggctgaagatcaagccggaatat
gtgggcggcttgatggatgagctggatgttctgatcgttggcggctattgggggaaaggg
agaaggggtggtatgatgtcccattttctatgtgccgttgcagaagcgccaaagcctggc
gagaaaccctcggttttccattcgctctgccgcatcggctccggctacactatgaaggag
ctgtacgaccttggcttgaagctcgccaagcactggaaggtttatcgcaaaaacgacccg
ccggccaacatcctgtgcgccaccgagaagcccgaggtctacatcgagcctcgcaactcg
gtcatcctccaggtgaaagctgccgagatagtcgtcagcgacatgtataaaaccaactgc
acgctgcgcttcccgaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatc
accctcgccgagctggagcagttccgtggcaaggcgtcggggaaacttttttcgcggcac
cttgatatcgccgccgccggtcagccacagagaaaaagaccaaagctgcctgccaaaccc
aagaaggcggtcagtgacctgtataagcagcaggatctctctggggttaccaaggagacg
gacatgttcgaggatgtagagttctgcattctgaacggcatggaggatcaccccaaggct
gagttggagaaaggcgtggccaggtgtggcggtattgtcgttcagaacccagggccagat
acttactgcgtgatcgccggattggagaacatgcgcgtgaagaacctgattctctccaac
cagcacgatgtggtgcgggcctcgtggctgctggaatgtctggagcagaagggatttgtt
ccctggcaaccacgccacatgatccacatgtcaccctccaccaaggaacactttgccagg
agctacgaccgctacggcgacagctacttccaggacactgacgaacagcagctgcgggag
gtgtttgaacgcacgggaaggatggaaagctcaacagccgtcgacgtctgccaagtcgag
gagcgatacggctggggtgatcttcccaccagtatgttccgacctttcacagtttacatg
gatgactacgcggacatcaacgaccctgcaaccgccatttccgcaagttgtttggatatc
agggccatggagtttcgctaccacggaggcacagtggtggacaggttggaggaaggcgtg
tcccacgttgttattgcggcagaaaccagacttgaggatttgaagagattgaggcgcagc
tttcgaaagaagttcaaaatcgtcaaggacacttgggtgactgactcaatcggagcaggg
catctgatgaacgatgacaactatttggtttga
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