Syngnathus scovelli (Gulf pipefish): 125990869
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Entry
125990869 CDS
T08785
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125990869 (scn4aa)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125990869 (scn4aa)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
FraC
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
125990869
NCBI-ProteinID:
XP_049614134
LinkDB
All DBs
Position
21:complement(6540125..6553095)
Genome browser
AA seq
1840 aa
AA seq
DB search
MAPPLPPSGANAFRLFTRESLAEIERLQVEKRKKADAVDGHDEAEVEEEKTPATPNADLE
AGKSLPWIYGDPPAEMINTPLEDLDPFYKTQKTFIVLSKGNTIFRFNAEPACYLLSPFSI
VRRGSIKILIHSLFSMFIMITILSNCVFMTMSNPPAWSKNVEYAFTGIYTFEATVKVLSR
GFCIGSFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTITVIPGLKTI
VGALIQSVKKMGDVMVLTVFALAVFALVGLQLFMGNLRHKCVRWPIDGNGTEWFNVTDTL
AFDNQTIGFNASDYSNGTFDFAEYIENSENYYFLDGSKDPLVCGNGSDAGVCPEGFTCMK
AGGNPNYGYTSFDSFGWAFLALFRLMTQDYWENLFQMILRAAGKTYMLFFVVVIFLGSFY
LINLILAVVAMAYDEQNQATQREAKEKEEEFQRILEQLKNQEQAQQSGSRESLNSRKLPS
RHSSPERDEAVKDCNGKMVPSLMVRPPTMVVCNDDEELREKSPGMLNPDDHHPDDQSQRQ
RSTSAMEELEDAQRPCPPGWYKFANIFLKWNCCKPWMILKKWLYVIVMDPFFDLAITICI
VLNTLFMAMEHYPMTQEFDEMLSVGNLVFTGIFTAEMVLKLIAMDPYYYFQVGWNIFDSI
IVTLSLAELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLA
IIVFIFAVVGMQLFGKNYKDCVCKISDDCELPRWHMNDFFHSFLIVFRILCGEWIETMWD
CMEVSGAGMCLIVFMLVMVIGNLVVLNLFLALLLSSFSGDNLSTADDDGELNNLQIAVGR
ITLGIDWLKANVTKIPGRILGKIPKATEDTVEMNDLDKTADGIANCRASGAGSDGELVPI
AQGESDFEILDDDDDEYDSNLSTCGDSLHDDKSLEDDLGLIKEVKLMGVATEDADVSMCS
TADYQPPKPELEEEEEEEPDPVEPEACFTDNCIGRWPCLTVDVDTTKGKRWWKLRKTCFA
IVEHDWFETFIIFMILLSSGALAFEDIYLERRRMIKIILEYADKVFTVVFVIEMILKWTA
YGFKTYFTNAWCWLDFFIVDVSLISLVANWMGFSELGPIKSLRTLRALRPLRALSRFEGM
RVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVTMFAGKFYRCINTTTEEPFAVAEVNNR
TECLALQEATGEARWVNIKVNYDNVGKGYLSLLQVATFKGWMDIMYAAVDSREVEEQPSY
EINLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGDKDIFMTEEQKKYYEAMKK
LGSKKPQKPIPRPTNFLQGLVFDLTNQQFFDIFIMVLICLNMVTMMVETDNQSAEKEDFL
FKVNLAFIAVFTTECVLKLFALRQYFFTNGWNVFDFIVVILSIAGTMLSDLIEKYFVSPT
LFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFA
YVKKEAGVDDIFNFETFGGSIICLFQITTSAGWDGLLLPMLNREPPDCDPDFENPGTDVR
GNCGSPGLGMMFFSSYIIISFLVVVNMYIAIILENFNVAQEESSDALCEDDFEMFNETWE
KFDTDGTMFIEYARLSDFCDALQEPLRVAKPNRLRLIHMDLPLVIGDRIHCLDILMAVTE
MVLGDTLEMAAMRESIKTKFLQSNPTSDSFAPITTTVRHKEETWAATVIQRAYRSHLLRR
GLRHAAFLRRSKRGTAQVQDPAEKKGLIARKMGALYASCVNLDKENETLLAPGTRPGLGA
PRSSVMSVPVEISNEVVLHSAPEPTRVLDSLEEHIRESHV
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggctcccccgctccctccctcaggcgccaacgcgttccgcctcttcacccgagaatcg
ctggcggagatcgagaggcttcaagtggaaaagcgcaaaaaggcagacgcagtagacgga
cacgatgaggctgaggtggaggaagagaagacgccggcgacccctaacgccgacttggaa
gccggcaagagtttgccgtggatttacggagatcctccggcggagatgatcaatacaccg
ttggaggatttggaccccttctacaagactcagaagaccttcatcgtgcttagcaaaggc
aacaccatcttcaggttcaacgcggagccggcgtgctacctcctgagccccttcagcatc
gtgagaagaggatccatcaaaatcctcatccattcattattcagcatgttcatcatgatc
accattttatccaattgcgtgtttatgaccatgagcaacccgccagcctggagtaaaaat
gtcgagtacgcttttactgggatttacaccttcgaggccaccgtcaaagttttgtccaga
ggcttctgcatcggctcgtttacattccttcgagacccgtggaactggctggatttcatg
gtgatcagcatggcgtacatcactgagttcgtcgatctcggtaacgtgtccgccctcagg
accttccgtgtactacgagcccttaaaaccatcactgtgattcctggtctaaaaaccatc
gtgggcgcgttgatccaatcggtgaagaaaatgggggacgtgatggtcctgactgtcttc
gctttggccgtgttcgctctggtcggcctccagctgttcatgggcaacttacggcacaag
tgcgttcgttggcccatcgacggcaacggcaccgaatggttcaacgtcaccgacacgtta
gcgtttgacaaccaaacaatcggtttcaacgctagcgattattccaatggcaccttcgat
tttgcggagtacatcgagaactcggaaaactactactttctggacgggagcaaagatcct
cttgtatgcgggaacggttccgatgctggagtctgccctgaaggtttcacgtgcatgaag
gccggcgggaacccaaattacggctacaccagcttcgactcgttcggctgggctttcctg
gcgctcttcagactcatgacccaggactactgggagaacctcttccagatgatcctgcgg
gcggcgggcaaaacgtatatgctcttcttcgtggtggtgatcttcctgggttccttctac
ctcatcaacctcatcctagcggtggtggccatggcgtacgacgagcagaaccaggccacg
caacgtgaggccaaggagaaggaggaggagtttcagcggatcctcgagcagctcaagaac
caggagcaggctcagcagtctggaagtcgagaatctctgaacagtcgcaagctgccaagt
cgccactcgagcccggagcgcgacgaagctgtcaaggactgtaacggcaagatggtccca
agcctcatggtccgaccgcctaccatggtcgtgtgtaatgacgatgaggagctcagggag
aagtctccaggcatgcttaatccagatgatcatcatccggatgatcagagccagaggcag
aggtccactagcgccatggaagagttggaggacgctcagaggccgtgcccaccaggctgg
tataaatttgccaatattttcctcaagtggaactgctgcaagccgtggatgatcctcaaa
aagtggttgtacgttattgtgatggaccccttcttcgacctggccatcaccatttgcatc
gtgctcaacacgctcttcatggccatggagcattaccccatgacccaagagtttgatgag
atgctctccgtggggaacctggttttcactgggatcttcacagcggagatggtccttaaa
ctcattgccatggatccttactactacttccaagtgggttggaatatttttgacagcatc
atcgtaactctcagtcttgcagagttgggcctggcaaacgttcaggggctctcggtcctg
cgttccttccgtttgcttcgtgtcttcaagctagccaagtcctggcccacactcaacatg
ctgatcaagatcatcggaaactccgtgggcgccctgggcaacttgacgctggtgctggcc
atcatcgtcttcatcttcgccgtggtgggcatgcagctctttggcaagaactacaaggac
tgcgtatgcaagatctccgatgactgcgagctgccgcgttggcacatgaacgactttttc
cactccttcctcatcgtctttcgcatcttatgcggcgaatggatcgagaccatgtgggac
tgcatggaggtgtccggggcgggaatgtgcctcatcgtcttcatgttggtcatggttatt
ggaaatctcgtggtgctgaacctcttcctggcgctcctgctcagttctttcagcggtgac
aacctgtcgacggcggatgacgacggcgagcttaacaacctccagatcgccgtcgggagg
atcacgctaggcattgactggctcaaagctaacgtcaccaaaattccagggagaatcctg
ggcaaaatacccaaggccactgaggacacggtggagatgaacgacttagacaaaacggca
gatgggatagcaaattgtcgggcttctggcgccggttcggatggagagcttgtgcccatc
gctcagggggagtcggattttgaaattctggacgatgatgacgacgagtatgactccaat
ctttccacttgtggtgacagccttcatgatgataaaagcctcgaggatgatctaggtctt
atcaaagaagtcaaactgatgggcgtggccaccgaggacgccgacgtatcaatgtgcagt
acggccgattatcaaccgcctaaacccgaactggaagaagaagaggaggaagaaccggat
ccggtggagccggaagcctgcttcactgacaactgcattggacgttggccgtgcctcacc
gtggacgtggacaccaccaaaggcaagcgatggtggaagctccgcaagacctgctttgcc
atcgtggagcacgactggtttgaaaccttcatcatctttatgatcttactcagcagcggc
gctctggcttttgaagacatttatcttgagcgacggcgaatgatcaaaattatcctggag
tacgccgataaagttttcaccgtcgtctttgtcatcgagatgatcctgaaatggacggcg
tacggtttcaagacctacttcaccaatgcctggtgctggctggactttttcattgtcgat
gtttctctgattagcttggtggctaactggatgggattctccgagctggggccaatcaaa
tccctccgaacgctgagggcgctgaggcctctacgagcactctccagatttgaaggcatg
agggtggtggtgaacgcgctggtcggcgccatcccgtccatcttcaacgtgctattagtc
tgcctcatcttctggctcatcttcagtatcatgggggtcaccatgtttgccggcaagttc
taccgctgcatcaacaccaccacggaggaacccttcgctgtcgccgaagtcaacaaccgc
accgagtgcctggccctgcaggaggccacgggggaggcccgctgggtcaatatcaaggtc
aactatgataatgtggggaaaggctacttgtcgctgctccaagtggcaacctttaaagga
tggatggacatcatgtatgccgctgttgactccagagaagtggaggagcaaccgtcgtac
gagatcaacctatacatgtacatctactttgtcatcttcatcatcttcggttccttcttc
acgctcaacctcttcatcggtgttatcattgacaacttcaaccagcagaagaaaaagttg
ggagataaagacatcttcatgacggaagagcagaagaagtactacgaagccatgaagaaa
ctcggttccaagaagccgcagaagccaattccacgtcctacgaacttcctccagggcttg
gtgtttgacctcaccaatcagcagttctttgacatcttcatcatggtgctcatctgcctc
aacatggtgaccatgatggtagagacggacaaccaaagcgcagagaaggaggatttcctc
tttaaagtcaatctggcctttattgcggtcttcaccaccgagtgcgtgctgaagctcttt
gctctccggcagtacttcttcaccaacggttggaatgtattcgacttcatcgtggtcatc
ctctccattgctggcaccatgctgtcggacctgatcgagaagtactttgtgtcacccacg
ctcttccgtgtgatccgtctggcccggatcggtcgaatcctgcgtctcatcaaaggcgcc
aaaggcatccggacgctcctctttgccctgatgatgtcactccccgccctcttcaacatc
ggcctgctgctcttcctcatcatgtttatcttctccatcttcggaatgtccaacttcgcc
tatgtcaagaaggaagcgggcgtggatgacatcttcaactttgagacgtttggcgggagc
attatttgcctcttccagatcaccacgtcggccggctgggacgggctcctgcttcccatg
ctcaacagggagccccccgactgcgatcccgactttgagaaccccggcacggacgtgagg
ggcaattgtggcagcccgggtttgggcatgatgttcttcagcagctacatcatcatctcc
ttcctggtggtggtcaacatgtacatcgccatcatcctggagaacttcaatgtggcgcag
gaggagagcagcgacgcgctgtgcgaggatgactttgagatgttcaacgagacgtgggag
aagtttgacacggacggaaccatgttcatcgagtacgcccgcctctctgacttttgcgac
gctctgcaggaaccgctgagggtcgccaagcccaaccgccttcgtctgatccatatggac
ctcccgctggtcatcggcgatcgcatccactgcctggacatcttgatggccgtcacggag
atggttcttggagacacgttggaaatggccgccatgcgggagagcatcaagaccaagttc
ctccaaagcaaccccacctcagactccttcgcacccatcactaccaccgtacgccacaag
gaggaaacgtgggccgccaccgtcatccagcgggcctatcggagccacctgctgcgacgc
ggactccgtcacgccgccttcctgcgccgctccaagagaggtaccgcccaggtccaagac
ccggcagagaagaagggcttgattgcgcgcaaaatgggagcgctgtatgctagctgtgtg
aacctcgacaaggagaatgagactcttttggcaccaggaaccagaccaggtcttggcgct
cctaggtcaagtgtcatgtcggtacctgtggaaatcagtaatgaggtggtgctacattct
gctcccgagccaacccgagtcctcgacagccttgaagaacacatcagagagtcgcatgtg
taa
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