KEGG   Syngnathus scovelli (Gulf pipefish): 125990982
Entry
125990982         CDS       T08785                                 
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
  KO
K10605  breast cancer type 1 susceptibility protein [EC:2.3.2.27]
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440  Homologous recombination
sscv03460  Fanconi anemia pathway
sscv04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125990982
  09124 Replication and repair
   03440 Homologous recombination
    125990982
   03460 Fanconi anemia pathway
    125990982
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sscv01009]
    125990982
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sscv04121]
    125990982
   03036 Chromosome and associated proteins [BR:sscv03036]
    125990982
   03400 DNA repair and recombination proteins [BR:sscv03400]
    125990982
Enzymes [BR:sscv01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125990982
Protein phosphatases and associated proteins [BR:sscv01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     125990982
Ubiquitin system [BR:sscv04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    125990982
  Multi subunit type E3
   BRCC complex
    125990982
Chromosome and associated proteins [BR:sscv03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     125990982
DNA repair and recombination proteins [BR:sscv03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     125990982
    BRCA1-A complex
     125990982
    BRCA1-B complex
     125990982
    BRCA1-C complex
     125990982
    BRCA complex
     125990982
   FA (Fanconi anemia) pathway
    Downstream FA components
     125990982
SSDB
Motif
Pfam: BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_4 zf-RING_UBOX RING_XB3-XBAT31 zf-RING_2 zf-C3HC4_3 RTT107_BRCT_5 zf-Nse zf-RING_5 zf-RING_10 zf-RING_4 zf-ANAPC11 zf-RING_6 zf-MIZ zf-PARP LIG3_BRCT zf-rbx1
Other DBs
NCBI-GeneID: 125990982
NCBI-ProteinID: XP_049614385
LinkDB
Position
21:8430207..8438680
AA seq 1189 aa
MAPPKDSEVKRGIAALWETLQCPICLDLLTQPVSTKCDHQFCKFCMLKLLENSKQNRANC
PVCKEKITKRSLQESPGFQRLVTGLQDIIQAYEHDTGTNYFTGLAQEGRRSTVNDDKHDD
GTPNNVEGVVKPLPSSHSSSIAALNGFARVMGFGDSTTLMTEDQFQSHSVHMSQSIDSIP
ASGLATGEKRQKDQVVLENQPLTQSFAKEQIEEEPQIFERRKRKSKKRVAEWLLKVPAEK
SLELEEPAEVAHLSDDSDSAASDKKEQIAKTVEEQVFGFTYRRKQRDKRSSGGKLLSHTK
RLSKKKNITSLEEKLVDLEDPATMDVSEEPGNCENHKKDLDNPPENAEMTSFGTFQPERT
PTRLRSSLRQVDSDLQAKAETENYAPKKDKRRAPPERGKSTRAVKPLVLVGVHEGNDVTK
CSLPTEAVQVHIENYPSSEDQEAAVTTGTRRSKRLRKSSQNVRQPSPKKAATRQRTQTQG
EDVKEGATSDPRDANACKSNGCVYAKDICGIENMEISHLESHVEGPPTENQVDSDCDPAQ
VPGSESLFGTAPEDPAPPLIPSAKMETEDCNDSEVDTAQLLRTFKATKRRSFHLGPSSGK
KRRSEDEEPVHSPEKRNLTRSRTQRAKQQTTPRSDITGMSICSNLIPPTDSPAKKMDAEG
VAAPVPLGSSVSSALSQQKVPSHETESPLPTFIPQVVDSGLHFHKHQEFPESSFESAPKE
DIGNLAEDPAAIGNGSARTSQHLLNADCSLTPDGLLDQPGHGTQSSVRSNPIRNTRRRAQ
RLQHSWESLSSCDEEVPTWTQILQEATHHPQDDADLDATQANQREADDVEVRCQSPDGVT
ASQASVDLFDSPNKSDLPANDASVPAELSQFGSEVLVTQQKVEMKNELVRLEKLMALVTE
VLQEKEASSPACSGVQKSGPRDPNARGDPDRKDLAEGAEEPIRERLLQSAVQMSPPPSPR
SGPAGESTADSNPSSSNKENKTPERNGAKMVLVPSGLGPAEQVAMRRFARKVGAGVVSQV
TAEVTHVVMCTDDQLVCERTLKYFLGIAGRKWVVSFQWIAECLKQKKLLDESLFEVRGDV
VNGADHLGPNRARTTGDDNLLMKGYEICLQGPFTNMTTAQMEWMVQLCGATVVKDLHSKR
KSNQLVIVQPGSEPCSYSGLAKQATVVTRAWLLDTVATYTFQGYENYLM
NT seq 3570 nt   +upstreamnt  +downstreamnt
atggcaccacccaaagacagcgaagtcaaaagaggcatagctgctctgtgggagactctg
cagtgccccatatgtttagatttgttgactcaacctgtttccaccaagtgcgaccatcag
ttttgcaagttttgtatgctgaagttattggaaaactccaagcaaaaccgagccaactgc
ccagtgtgtaaagaaaagataaccaaaagaagtttgcaagagagtccgggttttcagaga
ctcgtgacaggactgcaagacataatccaggcctatgagcacgacactggcacaaactac
ttcactggactggcccaggaaggaaggcgatcgacggtcaatgatgacaaacacgatgat
gggacccccaacaatgtggagggtgtcgtaaagcctcttccgagttctcattcatcaagt
atagcagctctcaatggatttgcaagagtgatgggattcggggattccactactttgatg
acagaagatcaatttcaaagccactctgttcatatgtcacaatcaattgactcgattccg
gcatcaggactcgctactggtgagaaaagacaaaaggaccaagttgttttggaaaatcaa
cctctcacgcagtcctttgcaaaagaacaaatagaggaggagcctcagatctttgagagg
aggaagaggaaaagtaagaagagggttgcagagtggctcctgaaggttcctgctgagaag
agccttgagttggaggaaccagcagaggttgcccacctttctgacgattccgacagtgcc
gcatctgacaagaaggagcagattgccaaaacggttgaggaacaagtctttgggttcacc
tacagacgaaagcaaagagataaacgtagctccggtggcaaactgctatcgcacacaaaa
aggctatccaagaagaaaaacataaccagccttgaagagaaacttgtagacctggaagac
cctgcaacgatggatgtctcagaagaaccaggaaattgtgagaatcacaagaaggatctg
gacaaccctccagaaaatgctgagatgacaagctttggcaccttccagcctgaacgcacg
ccaacgaggttgcgtagctctttgcggcaggtcgactccgatttgcaggccaaagcggag
acggaaaattacgctccgaagaaagacaagcgtcgagcccctccggagagaggcaagtcg
acccgggctgtcaaaccccttgtccttgtcggagttcacgagggaaatgacgtcactaag
tgttctcttccgacggaggctgttcaggttcatatcgagaactacccgagcagcgaggac
caggaagcggcagtcacgacgggcaccaggagatccaagagacttcgcaagtcttcccag
aacgtccggcagccatctcccaaaaaagctgcaactcgccagcggacgcaaacgcaagga
gaggacgttaaagaaggcgctacatcggatcctcgggatgcaaacgcttgcaaaagtaac
ggttgcgtatatgccaaagacatctgtggcattgaaaacatggagatctcccatctggag
agtcatgttgagggtccacccactgaaaaccaagtggattcagattgtgaccctgctcag
gttccaggttctgaaagtctatttgggacagctccggaagatccagctccacctttgatt
ccgagcgccaagatggaaacggaggactgcaacgacagcgaggtggacactgcccaactc
ctaagaaccttcaaggccaccaaaaggaggtcgttccacctcggtccatcgagtgggaag
aagaggcggagtgaggatgaagaacctgtgcacagcccggagaaacgcaaccttacgaga
tcaagaacccagcgtgccaaacagcagaccacaccgagatcggacatcactggcatgtca
atttgtagcaatttaatccccccaaccgattcacccgccaagaaaatggacgccgaaggg
gtggccgctcccgttcctctcgggagtagcgtcagcagtgccctcagccagcaaaaagtg
ccatctcatgaaacggaaagccctctcccgaccttcatacctcaagtcgtggattctgga
ctccattttcataagcaccaggagtttccagagagttcgtttgaatccgcccccaaggag
gacatcgggaacctggctgaggaccccgccgccatcggaaacggttcagcaaggacatcc
cagcatctcttaaatgccgactgctccttgactccggacggcctcttagaccagccgggt
cacggaacccagtcgtccgtccggagcaaccccatccgcaacacgagaaggcgggcccaa
aggctgcagcactcatgggagtcactgagcagctgcgatgaggaggtgcccacttggacg
caaatattacaagaggccacccaccaccctcaggacgacgctgatctggacgccactcaa
gctaaccaacgtgaggctgatgacgtcgaagtgcgctgccagagtccagacggcgttacc
gccagccaagcctccgttgacttgtttgactctccaaataagtccgacctgccagcaaac
gatgcaagcgtgcctgccgagttgtcgcagttcggaagcgaggttcttgtcacacagcaa
aaggtggagatgaagaacgagctggtgaggctggagaagttgatggcgctggtaaccgag
gtcctccaggagaaggaggccagttcgcctgcgtgctcaggcgtgcagaaatcgggtcca
cgtgacccgaacgcaaggggtgatccagacaggaaagacctcgcagaaggtgcagaggag
cccataagagaacggctgcttcagtccgccgtccagatgtcgccgccaccttcgccacgc
tcaggaccagctggggaaagcacggctgattcaaatccatcctccagcaacaaggagaac
aagactcccgagagaaacggagctaaaatggtgctggtgccgtctggtttggggcccgcc
gagcaggtggccatgcggaggtttgccaggaaggtgggcgctggtgtggtttcccaggtg
accgcggaagtgacgcacgtcgtcatgtgcacagatgatcaactagtatgcgagcgtact
ctcaagtacttccttggcattgcaggcaggaagtgggtggtgagcttccagtggatcgcc
gaatgcctcaagcaaaagaaactcttggacgagagtttatttgaagtccgaggcgacgtg
gtgaacggcgccgatcacctcggccctaacagagctcgcaccaccggtgacgacaatctt
ctcatgaagggctatgaaatctgccttcaaggaccttttacaaacatgaccacagcgcaa
atggagtggatggtgcagctgtgtggcgccaccgtggtcaaagacctccacagtaaacgg
aagtccaaccagctggtcatcgttcagcctggatcagagccatgttcgtacagcggtctc
gcaaaacaggccacagttgtgactcgcgcttggttgctggacacggtggccacctacact
ttccaaggttacgaaaactacctaatgtga

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