Syngnathus scovelli (Gulf pipefish): 125991253 Help Entry 125991253         CDS       T08785                                  Name (RefSeq) protocadherin-15 isoform X1   KO K16500   protocadherin-15 Organism sscv  Syngnathus scovelli (Gulf pipefish) Brite KEGG Orthology (KO) [BR:sscv00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:sscv03037]     125991253    04515 Cell adhesion molecules [BR:sscv04515]     125991253 Cilium and associated proteins [BR:sscv03037]  Primary cilia and associated proteins   USH complex and associated proteins    125991253 Cell adhesion molecules [BR:sscv04515]  Cadherins   Protocadherins    125991253 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin ECD PCDH15_12th Cadherin_FAT4_N Cadherin_CELSR2_9th Cadherin_4 Big_9 Motif Other DBs NCBI-GeneID:  125991253 NCBI-ProteinID:  XP_049614964 LinkDB All DBs Position 21:complement(7968745..8010450) Genome browser AA seq 1867 aa AA seqDB search MVLKMAAMFLIGPPSHAGVKRTGKTGIGVVCLLLSLLLLSTCLGQDTDDWQYEECKLSRS GPPATIVAIDEESPNGTLLVENMQINGVAEGPQRTISLSLRDNHNHWVILDPSKQALYLN SSGRVLDRDPPWYIQSIVVQVQCTNELVGTVILHEVRIVVRDRNDNGPRFQQPRYYVAVS ELTPVGTTIFSGFSGNNGAVDIDDGPNGQIEYTIQYNPKDPTANRTFDIPLTLFGAVVLR ERLNYEELTRYLVIIQANDRAPNPSERRSATTTLTVDVLDGDDLGPMFLPCSLVGNTRDC SPITYKANVLELTEPNKMNPLNVTPPIQAVDQDRNIQPPSERPGILYSILIGKPESYAEY FILNRTTAELLLLKPVDREVHRKFDLVVKAEQDNGHPLPAFASLQIEVLDENNQAPYFLE SSYRGYVAEGAPVGTTVAADPGLSDPLAVVALDNDVEESRDPHLQLSLDSYSDIFAVSTG GITRYLTLVQPLDREARDSYTFTLQASDGVQQSPPVAVTITVLDANDNTPTFANVSYSVH LYTDMMPGETVLQLSAVDEDDGPNGQVTYRILAGDQGQFLIGNSTGIITVAPSVGLSVGR SYALTVEATDNGAEPHRRSSITTVYIEVIPPNNQSPPRFPRQSYSLEISEAMRTGATLLN LQAVDREGDAIVYRINRGDHHGQFLLERDSGYLVLDKPLDRETLDEYTLVVTASDERPDG TSTATVNVAVTDVNDNDPLFDPSLPVNLTVAEKLDHAFVGQVKATDPDLGASGQVHYRLV NHQKLFSINATGAIKTVLPLDREVKAHYFLIVEAWDGGVDPRRSRQTLSVTVLDVDDNSP VFGQQTYNVELPENSPKDTLVLKLHAIDADLRSNLTYRIRTDGSSEEILRLFRLDPITGE LFVRKVLDFEALSPSSSSYTFTVEALDTEGTMPPGLASVTVTITDVNDFAPVFNQPMYRG MVAPNAVKGTIVTTVMANDSDPAGTPAGLVRYKVDHEVYSYSASIFEVEELTGNVVTRVN LNEEPNLKFSLVVVAYDDGEPVKENTTLVEITILQPSIIPIFTQEEYRFAPVSEEAAVGT PVGVILAAAVNQTIVYSIVEGNEGGVFALNNKTGLISTAKRLDYEANSSYLLKVEADSMR VVSSNLRAPSKSNTAAVVIDIQDENDHSPVFTTSLYIGGVAEDAKTFTSVLQVQALDKDT GNYSSMTYRLVNAPLAGKDGKDSKDGFVIEPLSGVVKTAIMYRNMRRSYFKFEVVATDNY GRGHSSKAEIVVSVVNQLDMQVVVSNVPPTYVDNNKDKLLSILERYVQEQIPGAKVFVEA IGPHRHGDGLEQEDYTKSDLMIYAIDPLTNRAVARQELHKFLDGKLLDINKEFQPFMPPG GRILEIRTPEVVTSVKKAVQTVGYTEGALLALAVIIIICCVPAILVVIITYRQYAHIIFT FDKQIHSFICIPQLNFLMSKESKTDMNRRGSHKEPCGTPHLIILSLQQKMMLVSNFFFLS MAVSCSLYFFRRFKERQEECAKTARIQMALPSSKPGGGTANNLYEELGDNAIRRYGQHET QQLLRPSLLRPEELSMESGIDPGQDYYTQDYYNYEHGYELPQYGSRRKLISPSGLYDEYG EVVVDDDGSYYYSPQESDAENGGRKRRIKLVVDREYETSSTGDDSGPEPLRGRSTSTFTN HTNVNGGLYVAQNGSVVRTRRSVTPTKPPSPIFSSRLAKHFKKLDKMAATLEEKLPLNSP RTSTDGGVKTLRTFKSPASPSFTNSDIHKTVNVFDSRQSSISSESVSNVGAEQASNADGG TDGGLRNGTSEDREAGEAERESRVDGSNSEGDDGLVMRDLPGERTRSEEEELWMGPWNNL HIPMTKL NT seq 5604 nt NT seq  +upstreamnt  +downstreamnt atggtgctgaagatggcggcgatgttcttaattggaccaccgtcgcacgccggggtcaaa cggaccggcaaaactggaataggagtcgtttgtctgctactctcgctactgctgctgtca acttgcctgggccaagacactgacgactggcaatatgaggaatgtaaactttctcgatcg ggtcctccggccaccatcgtcgccatcgacgaggagagtccgaatggaacgttgctggtg gaaaacatgcaaatcaacggcgtggccgagggaccccagcgaaccatctccttatctctg agggacaaccacaaccactgggtcatcctggacccttccaagcaagccctttacctcaac agcagcggacgagttctcgacagagaccctccgtggtacattcagtccatcgtggttcag gtgcagtgtaccaacgagctggtcggcacggtgatactccacgaggtccgaatcgtggtg cgcgatcgcaacgacaacgggccgcgcttccagcagccccgatactacgtcgccgtgagc gagttgactccagtgggcaccaccatcttctccggtttttccggcaacaacggagcggtt gacatcgacgacgggccaaacggacaaatcgagtacaccatccaatacaaccccaaagac ccgacagccaacagaaccttcgacatcccgctgacgttgtttggcgccgtggtgcttagg gaacgcctcaactacgaggagctaacgcgctacttggtcatcatacaagctaatgatcga gcgcccaaccccagcgagcggcgcagcgccaccaccacgctgacggtggacgttctggac ggcgacgacctggggcccatgttcttgccgtgctcgttggtcggaaacacccgcgactgc agcccaatcacctacaaggccaacgtgctggagctgaccgagccgaataagatgaacccg ctcaatgtgactccgcccattcaggccgtggaccaagacaggaatatccaacctccgtcg gagaggccgggaattctctactccatcctcattggcaaacccgagtcctacgcagaatat ttcatcttgaacagaaccacggctgagctcttgctgctcaaacccgtcgacagagaagtg catcgcaaattcgatctggtggtgaaggcggagcaggacaacggccacccgctgccggct ttcgccagcctccagattgaggtgctggatgagaacaaccaggcgccgtactttttagaa agcagctaccgaggctacgtagcggaaggcgcgccggtgggaaccaccgtggccgccgac ccgggtctctcggacccgttagccgtcgtggctctggataacgacgtggaggagagcaga gatcctcatctgcagctatcgttggacagctactccgacatattcgccgtgtcgacagga ggcatcaccagatatctgaccctggtgcagccgttggatcgagaagcacgagattcctac accttcacgctgcaagcatcggatggcgtccagcagagccctccggtcgccgtgacgata accgtgctggacgcaaacgacaacactccgacgtttgctaacgtgtcctacagcgtccac ctgtacactgatatgatgcccggtgaaactgtgctgcagctgtcagcagtcgatgaggac gacggtcccaacggacaggtcacctatcggattctagctggggatcaggggcagttcctt attggcaatagcactggcatcatcaccgtagcgccaagcgtggggctatcggtgggtcga agctacgccctgactgtggaagccacggacaatggagcagaacctcacagaaggtcgtcc attacgacggtctacattgaagttattccgcccaacaaccagagtcctcctcgcttcccc cggcagagctacagcctggagattagcgaggccatgcggacgggggccacgttgctcaac ctccaggctgtcgatcgggagggagacgctatcgtctacaggatcaaccgtggggatcac catgggcagtttttactggagcgcgattctgggtatttggtcttggacaaacctctggac agggagactctggacgagtacactctggtggtcacggcctcagacgagcgacccgacggg acgtccacggcgacggtgaacgtggcggtgacggacgttaacgacaacgatccgctgttc gatccgtcgttgccggtgaacctcaccgtcgcggaaaagctggatcacgcatttgtcgga caggtcaaggccaccgatccagatctgggggcaagcggtcaggttcactaccgactggtc aaccatcaaaagcttttctccatcaacgccacgggagccatcaagaccgtgctgccgttg gacagagaggtaaaggctcactactttctcatcgtggaggcctgggacggcggcgtggac ccgcggcggtctagacaaacgctatcagtcacggtcctggacgtggacgacaacagccct gtattcggccaacaaacgtacaacgtggagctgccggagaacagccccaaagatactttg gttcttaaactccacgcgatcgacgccgatctgcgctccaacctaacctatcgcatcaga accgacggttccagcgaggagattcttcggctttttcgccttgacccaatcacgggagag ttatttgtgcggaaagttctggactttgaagccttgagcccttccagttcttcttacacg ttcaccgtggaggccttggacaccgaggggaccatgcctccgggcttggcctccgttacc gtcaccatcacggacgtgaatgactttgctccagtctttaaccagccaatgtaccgcggc atggtcgcccccaacgccgtcaaggggaccatcgtaaccacggtgatggccaacgattcc gaccccgcgggaacaccagctggtctggtgcgctataaagtggatcacgaggtttattcc tactcggccagtatattcgaggtggaggaactcaccggaaacgttgttacgagagtcaac ctcaatgaggaacccaaccttaaattcagtctggttgtggtagcctacgatgacggcgag ccggttaaagaaaacaccacgctggtggagatcaccatccttcagccctccatcattccc atctttactcaggaggaatacaggtttgcgcccgtgagcgaggaagctgcggtcggaacc cccgtgggagtcatcctggcggcggctgtcaatcaaaccattgtgtactccatcgtcgag ggcaacgagggaggtgtctttgcgttaaataacaaaacggggttaatatccacggccaaa cggctggactacgaggccaactccagctaccttctcaaggtggaagcagactccatgagg gtggtctcatctaacctccgagctccttccaagagtaacacggcggcggtggtgattgac atccaggatgagaacgaccactcgccggttttcaccacctcgctttatatcgggggagta gcagaggatgccaaaacgtttacctcagtcttgcaagtgcaggctttggacaaagacacg ggcaactacagctccatgacgtaccgcctcgtcaacgcccccttggccgggaaagacggc aaagacagcaaagacggctttgtcatcgagccgctcagcggcgtggtcaaaacggccatc atgtatcgtaacatgcgacggtcctactttaaatttgaggtggttgccaccgacaactat gggcgaggacacagcagcaaggcggagatagtggtgtcagtggtgaaccagctggacatg caggtggtcgtatcaaacgtcccaccgacgtacgtggacaataacaaagacaaacttctc agtattttggagcgctacgttcaggagcagattcccggagcgaaggtgttcgtggaagcc attggtccccatcgtcacggcgatggactggaacaagaggactacaccaaatcagatcta atgatttacgctatcgacccgctgacaaatcgagccgtggccagacaggagctccacaag tttctggacggaaaactgcttgacatcaacaaagagttccagcccttcatgccccccgga gggcgcattctggagatccgaaccccggaagtggtgaccagcgtgaaaaaggccgtgcaa actgtgggctatacagagggggcgctgttggccctggcggtcatcatcatcatctgctgt gtacccgccatacttgtggttatcatcacctacaggcagtacgcgcacattatttttacc ttcgacaagcaaattcattcgttcatctgtatacctcaacttaatttcttaatgtctaaa gaaagcaaaactgatatgaaccgtagaggctcacataaagaaccctgtggaacgccacat ttaattatcttgtctttacagcaaaaaatgatgctggtatctaattttttttttctttct atggctgtctcttgttctctctattttttccgcagatttaaagaacggcaggaagagtgt gccaagaccgcccgaatccagatggcgctgccgagcagcaaacccggagggggcactgcc aacaacttatatgaggagctcggcgacaacgccattcgtaggtacggacaacacgagaca caacaactcctccgaccttctcttctcagacctgaggagttatccatggagtctggtatc gatccgggtcaggactactatacacaggattactacaactatgaacatggctatgagctt cctcagtacggcagtcggcggaagctgatctcgccctcgggcctctacgatgagtacgga gaggttgtcgtcgacgacgacggcagctactactacagcccgcaggaatccgacgcggag aatggcggccgaaagcggaggatcaagttggtggtggaccgcgagtacgagaccagttcc accggtgacgacagcggcccagaacccctccgcggacgttccacctccacgttcaccaac cacaccaacgtcaacggcggactgtacgtggcccagaacggctcggtggtccgcacccgc cgttccgtgacacccaccaagccgccgtcgcccatcttcagctcacggcttgccaagcac tttaaaaaactggacaaaatggcggccaccttggaggagaaactgcccctgaacagtccc agaacttcgacagacggcggcgtcaaaaccctgcgcactttcaaaagccccgccagccct tccttcactaactctgacatccataagaccgtcaacgtgttcgacagtcgacaatccagc atttcttcagagtcggtcagcaacgtgggggcggagcaagcctccaacgcggacggcggg acggacgggggacttcggaatgggacgagtgaggaccgagaagcgggagaggccgagaga gagtccagagtagacggcagcaacagcgagggagacgacggcctggtcatgagggatctt cccggtgagaggacgcggtcggaagaggaggagctttggatgggaccctggaacaacctt cacatccccatgactaaactctga

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