Syngnathus scovelli (Gulf pipefish): 125993514
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Entry
125993514 CDS
T08785
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125993514 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125993514 (kdm2ba)
04121 Ubiquitin system [BR:
sscv04121
]
125993514 (kdm2ba)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125993514 (kdm2ba)
Enzymes [BR:
sscv01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
125993514 (kdm2ba)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
125993514 (kdm2ba)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125993514 (kdm2ba)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
125993514 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
125993514 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_4
PHD
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
125993514
NCBI-ProteinID:
XP_049618049
LinkDB
All DBs
Position
3:14883620..14892626
Genome browser
AA seq
795 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKMATPSAVKLPSSRSSSGARRRRTRCRKCEACM
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEEDK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKRGPGF
KYASNLPGSLLREQKPMKEEGDMSSSLKRRPDREETPRHRPEEPLHRQPPLLSLNSVPRP
RLEDKLRKKRKLFDEEEEDDFRGRMKVGVRESLLPIQGMLGLASERSEDPCFSKILQQIK
MEEEDAFEDDDEDGRELFRGFVERNGRLGGAEDLTDDRDYKNDLLNSSLKLPTVDSDHSH
CSSPQAGPSSEGGSETQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENR
QPLKVEPESENEEPKRLFRNSNDLGEQRSHLKTKEMNGTPWELRHFYPSQITPLGFNRST
PTTRPVPPRSPPKCVQMERHVIRPPPISPPPDRLPLKDGKMHVLQREVWMTIFNNLTHQE
LCCCMRVSKTWNRWCCDKRLWTKIDLNRCTSITPLMLSGIIRRQPLSLDLSWTNISKKQL
SWLINRLPGLRVLKLSGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDN
RPGQLDNRCKLRNVEDLRLAGLDITDASLRLIIRQMPQLSRLDLSYCNHVNDQSVNLLTA
AGTTTRDSLTEINLSVCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKVGCERFIAEMSVS
VPFRLKEDKLLQKTS
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagtggagacgatgaggaatatgattcagagtccgaacagcagcgt
gcagccaatcgtccgaagcccaagatggcaacaccttcggctgttaaactaccatccagt
cgtagctcgtcgggagccagacggagaagaacacgttgccgaaagtgcgaggcgtgcatg
cgaacagagtgtggagagtgtcatttttgcaaggacatgaagaagtttggtggtccaggc
cgcatgaaacagtcctgcattatgagacagtgcatagcacctgttttgccccacacagca
gtatgcgtggtctgtaaggaggccgggaaggaggatacactggaggaagaggaagacaaa
ttcaatttcatgttaatggaatgttctatctgcaatgaaattgtccatcccaactgcctc
aaggtgagcgatgcctctggcgtggtgaacgacgagctcccaaattgctgggaatgccct
aagtgcaaccatgctggaaagagtggaaaagtattaaagcaaaaaaggggtccagggttc
aagtacgcctccaacctccctggctctctgctgagggaacagaaacctatgaaggaggag
ggggacatgtcgtcttcactcaagagaagacctgacagagaggagacacccaggcatcga
cctgaggagcctctacaccggcagccgcccctgttgtccctgaacagcgttccccgccct
cgactcgaggataagctgaggaagaagaggaagctctttgatgaagaggaggaagatgat
ttcagaggaaggatgaaggttggtgtcagagagtccctacttccgatacagggaatgttg
ggccttgccagtgagaggtcagaagacccttgtttctcaaaaatcctgcagcaaattaag
atggaagaagaagatgcgtttgaggacgacgatgaagatggaagggaacttttccggggt
tttgtagagcgaaatgggcgtttgggcggtgctgaggacttgacagatgacagagactat
aaaaatgatcttttgaattcttccctcaaattgcccaccgtggacagtgaccactcccac
tgcagctctccacaagctggcccaagcagcgaaggcgggagcgagacccaggaaaaaggc
cctcgtcccaaagctcggcgcaaaaggcgtttacccaacagggagttgagcagagaactg
agcaaagcactaaaccaggaaattcagaagaccgaagactgcctggccaatgagaaccgc
cagcctctgaaggtggagccggagtctgaaaatgaagaacccaagaggttgttccggaat
agcaatgacctcggcgagcagaggtcccaccttaagaccaaggagatgaatggcaccccc
tgggaactgcgccacttctacccgagtcagatcacgccgctgggcttcaaccggagcacg
ccgaccacccgaccggtgcctccgcgctcgccacccaagtgtgtccaaatggaacgccac
gttatccggcccccgccaataagcccgcctcctgatagactgcctctgaaagatggcaaa
atgcacgtcctccagcgtgaggtctggatgaccatattcaacaacctcacacatcaggag
ctctgctgttgcatgagagtgtccaagacatggaacagatggtgctgcgataaaagactg
tggacaaagatcgatctgaaccgctgcacgtccatcacgccactcatgcttagcgggatc
attcggcgacagccactctccctggatctcagctggaccaacatttccaagaaacaatta
agctggctgattaacagattgccaggtctgcgggtgttgaagttatccgggtgttcgtgg
gctgctgtatccgcgctctgcacctccagctgcccattactccgaacactggacgtgcag
tgggtggaggggctcaaggacgcacagatgagggatctcctctcacctcccacagacaac
aggccaggtcagctagataaccgctgcaaattgcggaatgtggaggatttgcgtctggca
ggcctggacatcaccgatgcatctctccgcctcatcattcgccagatgcctcagctttcc
cggctggacctgagctactgtaaccacgtcaacgaccagtcagtcaacctgctgacagca
gccgggaccaccactagagactcactcacagaaatcaacctgtcagtttgtaaccgggtc
acagatcattccctgaactttttcaagcgttgtggaagcatctgccagattgaccttcgc
ttctgcaagcaggtgaccaaggtgggctgcgagaggttcatcgccgaaatgtccgtgagt
gtcccgtttagactgaaggaggataaactgctgcagaagaccagctag
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