Syngnathus scovelli (Gulf pipefish): 125993693
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Entry
125993693 CDS
T08785
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125993693 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125993693 (kdm2ab)
04121 Ubiquitin system [BR:
sscv04121
]
125993693 (kdm2ab)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125993693 (kdm2ab)
Enzymes [BR:
sscv01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
125993693 (kdm2ab)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
125993693 (kdm2ab)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125993693 (kdm2ab)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
125993693 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
125993693 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
C1_1
LRR_6
PHD
LRR_4
Cupin_1
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
125993693
NCBI-ProteinID:
XP_049618462
LinkDB
All DBs
Position
1:13232761..13244678
Genome browser
AA seq
1283 aa
AA seq
DB search
MLEAMEDTHTRYSKRLRTGTRRRYQDDGISDDEIEGRRMFDLDEKLQCSRFGSELVKHME
GKDFTFEYIQREGLRDPIIFEKDEGLGIQMPDSDFSVSDVKVFVGSRRIVDVMDVNTQKG
IEMSMAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVQRPASVDLIDWVDNMWPRHLK
ERQRDSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPSP
QNLEMYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFMIPSGWIHAVYTPEDTLVFGGN
FLHSFNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYS
LGIGLTRADLGIHNNTGNGASNGIDDDVEIKLKESEDEEVLTEENNPVIRPRHIMTPFEL
EGLWNLVGKLEELPASKKCVPSGIGNPEALLEDMRAVLKEHAMDIPKLSYTGEPIVKWPK
RPSWYQPPEPPPAPLYRSRLAPPLHKSLGHKRSRISALRRRRVRCKTCAGCSRKECGDCQ
FCLDMRKFGGPGRMKKGCVMRQCLMPALPNTARCAICEEGEAEESHPSTHTLMECSVCSR
ITHRRCMKDPGEGKINTDLPSLWECPRCYNSKGSESDQSFSEGESEESESSTSLPPSKPA
YREGIGVRGRRGKAISRPTARPTAPPPSQKLLLQHRRSRKRASLLELRLKKRIKLERSKI
LAQKQVMERARLQSRLRSPVNALSQGRGRGTSYPHGSSSRVTGSLQLQSIPSLAIEPKVE
PCRGRGRGVRLRGGGAGRGMTGSRYHQGLEVESEDSSSSSSTNSSSSDDDEEGERVQNGK
QAGNKENQPLSSSGGQAAKDREEEERRDTNQNGGEDGGNEMEQGANGSFIKVTLQRPTND
KQEPSAIVPKLEAITPQFAPAAKHNPNKTLIRPPIRNPNKHSSGQVPAINRGGHTRTSHQ
TEGHEITKRKKQSSAAKLSNGASSSCSSELLHHRIPLSALQDGGSEADRAGGESRPDCER
EVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRLWAQIDLSIKRTITPQALTGIIKRQPA
SLDLSWTNISKKQLGWLVGRLPGLKDLMLAGCPWTSISALCSSACPLLRTLDVRYADGVK
DAQIRDLVTPPGCDNRSQLRTMQCLRLAGLDISDSTLRLVIRHMPHLTKLDLSHCNNLTD
HSINLLTAVGSSTRNTLTELNLGGSSKLTDACLTYLRRLSCISLLDLRGCKGVSRKACES
FISELSVNTLYCLSDEKLIQRIS
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaggctatggaggatactcatacacgatacagcaaacgcctgcgcactgggaca
cggcggcggtaccaggatgacggaatctctgacgatgaaatcgaagggagacgtatgttc
gacctggatgaaaaattgcagtgtagcaggtttggctctgaattggtcaaacatatggaa
gggaaagatttcacgtttgaatacatccaacgagaaggtttgagggatcccatcatcttt
gagaaagatgaaggccttggaatacaaatgccagactctgattttagcgtgagtgatgtg
aaggtgtttgttggcagtcggcgcatcgttgacgtgatggatgtaaacacccagaaggga
atcgagatgtcaatggcacagtggcggcgctactacgagactccgccatctgaaagagag
aaactttataatgttatcagcttggagttcagccacaccagattggagaatctggtccaa
agacctgcttcagtggacctgattgactgggtggacaacatgtggcctcgccatctcaag
gagagacagagggactctaccaacgccatcattgacatgcactatcccaaagtacagaag
tactgtctaatgagcgtgcagggctgcttcacagatttccatatcgactttggcggcact
tcagtctggtatcacatactccgaggaggaaaggtgttctggttgattccacccagcccc
cagaatctggagatgtatgagaactgggttttgtcaggaaagcagggagatatcttcttg
ggagacaagtgtcacgactgccagaggatagagctcaagcagggcaacaccttcatgatt
ccctcagggtggatccatgctgtgtacacacctgaggacaccctggtgtttgggggcaat
ttccttcacagcttcaatattcccatgcagctcaacatctacagcattgaagatcgtact
cgggtcccagccaagtttcgctatccattttactacgagatgtgctggtatgtcctggag
aggtacctctactgcctgacaaacatttcccacctcacccccgagttccaaaaatactcg
ctcggcataggcctgacgcgagcagaccttgggatccataacaacacaggtaacggtgcc
tccaatgggattgacgatgatgtcgagataaagttgaaggaatccgaagacgaagaagtc
ctaacggaagaaaacaatccagtcatcagaccgcggcatattatgacaccctttgagctt
gaggggctgtggaaccttgtggggaagctggaggaattgcctgcaagcaaaaagtgtgtt
ccttctggaattgggaatcctgaagcattattagaagacatgagggctgttctgaaagag
catgcaatggatatccccaagctgtcctacactggagaacccattgtcaagtggcccaaa
agaccatcatggtaccaacccccagaacctccaccagcgccgctttaccgttcccgcttg
gctcctccgctccacaaatcgttgggccacaaacgatcgcgcatttctgctttgaggcgc
cgacgagtgcggtgcaagacttgcgccgggtgcagcaggaaagagtgtggtgactgccag
ttctgtcttgacatgaggaagtttggcgggcctggaagaatgaagaagggctgcgtcatg
agacagtgtctcatgcctgctttgccaaatacagctagatgcgcaatttgtgaagaaggc
gaagcagaggaatctcacccaagcactcacacgctcatggagtgctctgtttgttcacgg
atcacccatcggcgttgcatgaaggatcctggtgagggtaaaataaatacagatttgcca
agcctttgggaatgtcctcggtgttataacagcaaaggctctgagtcagatcagtctttc
agtgagggggaaagtgaagaatcagagagttcaacgtccttgcctccatcaaaacctgcg
tatcgggaaggtattggcgtacggggccgacggggcaaagccatatcacgacccactgct
cggcccacagccccgccaccctctcagaaattgctactgcagcatcgacggagccgtaaa
agagcaagtctactggagctgcgactcaagaaaaggataaaactagagcgcagcaaaatt
cttgcacaaaaacaagtaatggagcgtgccaggttacagtcgcgcctgcgctctccagta
aatgcactatctcagggaagaggtcggggcacctcctaccctcacggaagctcttccaga
gtgactgggtccctccagctacagtctattcccagtctggccatcgaacccaaggtagag
ccttgcagagggcgggggagaggggtgaggctgcgtggaggaggagcaggaagaggaatg
acaggcagtaggtaccatcaggggctggaagtggagagtgaagacagtagcagcagcagc
agcactaacagcagcagctctgacgatgacgaagaaggggagcgagtgcaaaatggcaag
caagcaggcaataaagagaaccagccactgtcaagttcaggaggacaagcagccaaagat
cgagaagaggaagagcggcgagacaccaaccaaaatggtggagaggatggtggcaatgag
atggagcagggcgccaatggctcgtttattaaagtgacactccaaaggccaaccaatgac
aagcaggaaccttcagcaattgttcccaaactagaggcaatcacacctcaatttgcccct
gcggcaaaacacaaccccaacaaaaccctcatcaggccacctatcagaaaccctaataaa
cattccagcggtcaggtgccagcaatcaatcgcggtggccacacacggacatcccaccaa
acagaggggcacgaaatcaccaaacgaaaaaagcagagcagtgcagctaagctgagcaac
ggtgcctcctcctcttgctcctctgagcttctgcaccatcgcatccctttgtctgccttg
caagatggaggtagtgaagctgacagggcaggtggtgagagtaggccagactgcgagagg
gaagtatgggtgtccgtcttccgctacttaagtcgagcagatctttgtgtgtgtatggcg
gtctgcaaaaattggtacaaatggtgccttgacaagcgactttgggcgcagattgacctg
agcatcaaacgcaccatcacacctcaagccctgacgggaatcataaagagacagcctgct
tcacttgatctttcctggaccaacatctccaaaaaacaactcggttggcttgttggtcgc
cttccaggtctgaaggatctgatgttggcaggttgtccctggacgtccatttcagcactc
tgttcctctgcttgtcctctcctccgcactctggacgtgcggtatgcagatggggttaaa
gatgctcagataagagacttggtcactcccccaggttgtgacaaccgcagtcagttgagg
accatgcagtgtttgcgacttgccggcttggacattagtgactctaccctgcgcctggtg
atccgccacatgccccacttgaccaaactggacctttctcactgcaacaacctcacagac
cactccatcaaccttctgactgcggtgggttcgtccacccggaacacactaacagagctc
aacttaggagggagcagtaaactcacagatgcgtgtttaacgtatctccgccgcctgtct
tgcatatcactactcgacttgcgaggctgtaaaggtgtctcccgcaaagcgtgcgagtcc
tttatctcagagctatcagtcaatacgctctactgcctgtcagatgaaaaactgatccaa
aggatatcctaa
DBGET
integrated database retrieval system
