Shewanella sediminis: Ssed_0405
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Entry
Ssed_0405 CDS
T00596
Name
(GenBank) UDP-N-acetylmuramyl-tripeptide synthetase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
sse
Shewanella sediminis
Pathway
sse00300
Lysine biosynthesis
sse00550
Peptidoglycan biosynthesis
sse01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Ssed_0405
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Ssed_0405
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sse01011
]
Ssed_0405
Enzymes [BR:
sse01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Ssed_0405
Peptidoglycan biosynthesis and degradation proteins [BR:
sse01011
]
Precursor biosynthesis
Amino acid ligase
Ssed_0405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
ABV35018
UniProt:
A8FQ95
LinkDB
All DBs
Position
472911..474392
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AA seq
493 aa
AA seq
DB search
MLLRDLLAPWFHYAGSESFNKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVAS
LVHTDDPESHGKCVDDEGKQILFFQLNRQLSALAAQAYPLSAERLKLVGVTGTNGKTSIT
QLMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEV
SSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFNFPSLSSGLINLDDE
IGKQWLAEHDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAKLVWPGGHADLCSP
LLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERFTTPDDVTIVVDYAHTP
DAIEQALKALRGHCDGELWCLFGCGGDRDKGKRPLMAQAAEKYADRVVVTSDNARSEQPD
VIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKGHETYQEIAGVRRQYD
ERALARELSEAQV
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgctattacgtgatttgttagccccttggttccattatgcgggttcggaaagcttcaat
aagctgactttagatagtagggctgtgggcccgggggatctctttattgccatccccggt
catcaagccgatggccgaaagtatattcgttctgccgtacaacaaggtgctgtggcatca
ctggttcacaccgatgaccctgagagtcatggaaaatgtgtcgatgatgaaggaaaacag
atcttattcttccagcttaatcgccaactgtcagctttagcggctcaagcatatccactt
agcgcagaacgtttgaagttggtcggtgtaacaggcactaatggtaaaacatcgataacc
caacttatggcccagctggttaccttattgggaaaacagagtgcggtgatgggcaccctg
ggcaatggcctttggggtgacttagtcgatagcggtaatacgacagccgatgcaatcacc
atgatggctcagcttcaggagtttgatgcccaaggcgccgagttatgcgcgatggaagtc
tcgagtcatggtttgattcagggaagagtcgaggccgttcccttcgatgtggcggtattt
acgaacttaagccgcgatcatctggattatcatgggaccatgcaggcttatggcgatgcg
aagaaacgattatttaactttccctcgttaagctctggcttgatcaatcttgatgatgag
attggtaagcaatggctagccgaacacgatacggggaaatataccagtttcagtattcat
ggtgagccggcttcgattgaaaactcaaaagccatctacacccaaaataaccatttccat
catcagggggtcgatgcaaaattagtctggcctggtggccatgccgatctgtgttcacca
ttattaggctcatttaacctgtctaacctcattgccgcgctgggcgccttgtatttgctt
ggcttcgatatgcattcattagttgccgtggtgcctaagttacaagccgttgccggacgc
atggagcgatttaccaccccagatgatgtcactattgtcgtcgattatgcacacactccc
gatgccatcgagcaggcccttaaggcattaagaggtcattgtgacggtgagctgtggtgt
ctgtttggttgtggtggcgatcgtgataaaggcaagcgaccattgatggcgcaagccgca
gaaaaatatgcggatagagtggtggtgactagtgacaatgccagaagcgagcaacccgat
gtcatcattaacgatattctggaaggattaaccgcacccgataaggcgttaacacaagtg
gatcgagaagtggctattcgtcaagtggtggcaaatgccaaggcgggagacttagtgtta
ttagccgggaaagggcatgaaacctatcaggaaatagctggagttcgccggcaatatgat
gagcgtgcgctggcacgtgaactttccgaggctcaagtatga
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