Sphingomonas sediminicola: H9L14_05110
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Entry
H9L14_05110 CDS
T07077
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
ssed
Sphingomonas sediminicola
Pathway
ssed03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H9L14_05110 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssed03400
]
H9L14_05110 (nth)
Enzymes [BR:
ssed01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
H9L14_05110 (nth)
DNA repair and recombination proteins [BR:
ssed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
H9L14_05110 (nth)
Prokaryotic type
H9L14_05110 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Ogg-HhH
HHH_8
HHH_5
DUF7800
Motif
Other DBs
NCBI-ProteinID:
QNP46521
LinkDB
All DBs
Position
complement(942750..943472)
Genome browser
AA seq
240 aa
AA seq
DB search
MTREQVFEFFRRLAEENPSPTTELEYENPYTLLVAVVLSAQATDASVNIATRPLFEHVKT
PEQMVSLGETKVRDAIKTIGLFNTKAKNVIALSEALIRDHGSKVPGSREELEKLPGVGRK
TANVVLNTAFHEETFAVDTHIFRVCNRTGLAPGKDVLKVELKLEKVVPQPFRLNAHHWLI
LHGRYICKARKPECWRCPVIDLCRYKPKTPEPGSKASASRNASPRSSAVRTGKAQKPRTP
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcgcgagcaggttttcgagtttttccgcaggcttgccgaggagaacccctcgcca
accactgaacttgagtacgagaatccgtacacattgctcgtcgccgtcgtcttgtccgcc
caggcgaccgacgccagcgtgaacatcgccacccggccgctgttcgaacacgtgaagacg
ccggagcagatggtttcgctgggcgaaacgaaggtccgtgacgcgatcaagacgatcggc
ttgttcaacaccaaggcgaagaacgtcatcgctctttcggaagcgctgatccgcgaccac
gggagcaaagtgcccggcagtcgcgaagagctggaaaagctacccggcgtcggccggaag
accgctaacgtggtgctcaacacggccttccatgaagagaccttcgcggtcgacacgcac
attttccgagtctgcaatcgaaccggccttgcgcctggcaaggacgtgctcaaggtcgag
ctgaagctcgagaaggttgtcccccaacccttccggcttaacgcgcaccactggctgatc
ctgcacggccgctacatctgcaaggcacgaaagccagaatgctggcggtgcccggtgatc
gacctctgccgatacaagccgaaaacgcccgaaccggggtctaaggccagcgcctctcga
aacgcgagcccaaggtcgtcagcagttcgtactgggaaagcccagaagcctcggacgccg
tag
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integrated database retrieval system
