Streptomyces sediminicola: VM636_08990
Help
Entry
VM636_08990 CDS
T11831
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssel Streptomyces sediminicola
Pathway
ssel03030
DNA replication
ssel03410
Base excision repair
ssel03420
Nucleotide excision repair
ssel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VM636_08990 (ligA)
03410 Base excision repair
VM636_08990 (ligA)
03420 Nucleotide excision repair
VM636_08990 (ligA)
03430 Mismatch repair
VM636_08990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssel03032
]
VM636_08990 (ligA)
03400 DNA repair and recombination proteins [BR:
ssel03400
]
VM636_08990 (ligA)
Enzymes [BR:
ssel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VM636_08990 (ligA)
DNA replication proteins [BR:
ssel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VM636_08990 (ligA)
DNA repair and recombination proteins [BR:
ssel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VM636_08990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VM636_08990 (ligA)
MMR (mismatch excision repair)
DNA ligase
VM636_08990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VM636_08990 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Zn_ribbon_CLPX_N
Zn_ribbon_TFIIB
DUF8512
HHH
Motif
Other DBs
NCBI-ProteinID:
WVW67622
LinkDB
All DBs
Position
complement(2095003..2097198)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAQAREKHGHLSEQIEEHRFRYYVKDAPVVSDADFDRLLRSLEELEEE
YPELRTPDSPTQKVAGSYETEFTAVEHRSRMLSLDNTFNDDELAAWFDRVHRELGDQEYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADVPDRLRGDEIPDLVE
IRGEVFFPMERFQELNARLVAAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGA
LEGPTGMSRLSEAYDLLQTWGLPTSPHNRVVDGLAQAREFIAHYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNSKLLDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPARCP
ECGTPLRPMKEGDVDLRCPNARACPAQLRERVSYLAGRECLDIEHFGEVVAAALTRPLEP
ADPPLTDEGDLFDLTVEKLLPIRAYVLDPNSGLPKRDPKTGEEKVVTVFANKEGEPKKNT
LALLRNIEEAKTRPLARFLNGLSIRHVGPVAAQALAREFRSVDRIEQAGEEELSATEGVG
PIIAASLKEWFAEEWHREIVRKWKAAGVPLEEESAGEDEGPRPLAGLTVVVTGTLENHTR
DGAKEALQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEDGFTVLLEQGPE
AAADAALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagacgacgagcgtgcccgctcaggcacgggagaagcac
ggacacctctccgagcagatcgaggaacaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgcggacttcgaccggttgctgcgctccctggaggagctggaggaggag
tacccggagctgcgcaccccggactccccgacccagaaggtggccggctcctacgagacg
gagttcaccgccgtcgagcaccgctcgcgcatgctctccctggacaacacgttcaacgac
gacgagctggccgcctggttcgaccgcgtccaccgggaactgggcgaccaggagtaccac
ttcctgtgcgagctgaaggtcgacggactcgccgtcaacctcacctacgagcacggccgc
ctcacccgcgccgccacccgcggcgacggccgcaccggcgaggacatcacccccaacgtc
cgcaccatcgccgacgtccccgaccgcctgcgcggcgacgagatccccgacctggtcgag
atccgcggcgaggtgttcttccccatggagcgcttccaggagctgaacgcccgtctggtc
gccgccggggacaagccgttcgccaacccgcgcaacgcggcggccggttcgctgcgccag
aaggacccgcgggtcaccgcctcccggccgctgcacatggtggtccacggcatcggcgcc
ctggagggccccaccggcatgtcccggctctccgaggcgtacgacctgctgcagacctgg
ggcctgcccacctccccgcacaaccgggtcgtcgacggcctggcccaggcccgggagttc
atcgcccactacggcgagaaccgtcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccgcctgcagggccgactcggctccaccgcccgcgcaccccgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacagcaagctcctcgacatcaaggtc
ggtgtcggccgcaccggccgcgtcaccccctacgcacaggtcgagccggtcaccgtggcc
ggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtc
ctcatcggggacacggtggtgctgcgcaaggccggtgacgtgatcccggagatcctcggt
ccggtcgccgatctccgcgacggcagcgagcgcgagttcgtgatgcccgcgcggtgcccc
gagtgcgggacgccgctgcggcccatgaaggagggcgacgtcgatctgcgctgccccaac
gcccgcgcctgccccgcacagttgcgcgagcgcgtctcctacctggccggccgcgagtgc
ctggacatcgagcacttcggcgaggtcgtcgccgccgccctcacccggccgctggagccc
gccgacccgccgctgaccgacgagggcgacctcttcgacctcaccgtggagaagctgctg
ccgatccgggcgtacgtcctcgaccccaacagcggactgcccaagcgggacccgaagacc
ggcgaggagaaggtcgtcacggtcttcgccaacaaggagggcgagccgaagaagaacacc
ctcgccctgctgcggaacatcgaggaggccaagacccgccccctcgcccgcttcctcaac
gggctctccatccggcacgtcggcccggtcgccgcgcaggccctcgcccgcgagttccgc
tccgtcgaccgcatcgaacaggccggcgaggaggagctgtcggcgaccgagggcgtcggc
cccatcatcgccgcctccctcaaggagtggttcgccgaggagtggcaccgcgagatcgtc
cgcaagtggaaggcggccggcgtcccgctggaggaggagtcggccggcgaggacgagggg
ccgcgtccgctcgccgggctcaccgtggtcgtcaccggcaccctggagaaccacacccgg
gacggcgccaaggaggccctccagacccgcggagcgaaggtgaccggctcggtgtccaag
aagacgtcgttcgtggtcgtcggcgacaacccggggtcgaagtacgacaaggcgatgcaa
ctgaaggtgccggtcctggacgaggacggtttcaccgtcctgctcgaacagggtccggaa
gccgccgccgacgccgcgctttcggccgaggaatag
DBGET
integrated database retrieval system
