Solea senegalensis (Senegalese sole): 122771337
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Entry
122771337 CDS
T07721
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03272
Virion - Hepatitis viruses
ssen04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
122771337
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122771337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssen04131
]
122771337
Membrane trafficking [BR:
ssen04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
122771337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
TMEM154
Vgb_lyase
DUF5050
EGF_3
hEGF
EGF
DUF1180
Motif
Other DBs
NCBI-GeneID:
122771337
NCBI-ProteinID:
XP_043884793
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Position
LG6:9018797..9029909
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AA seq
872 aa
AA seq
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MFGMWRTLAGLSTCWCVLVLIHCSTPSDAAFTCSSTQLKCGNGRCVTRKWICDGSDDCGD
GTDELPETCATKTCLESEFNCGLPTNQCISGKWHCDGANDCDNGADEKNCTAKECSAEEF
RCANGQCISKSFVCDSENDCSDGSDEASCVKPTCNSRSFQCHNSVCMPSTWRCDGDEDCA
DGSDEWPENCVGEQPKKTEPLCQSHEFQCANGECIHGSWRCDGGTDCRDRSDEINCSRAT
CRPDEFQCNDGTCIHGSLQCDKRPNCRDLSDEIGCNIENECEGPTKFKCSSGECISAEKV
CDERRDCADGSDEPVKECGNNECLTENGGCSHVCSDLKVGYNCSCPSGFSLKVDKRTCED
VDECAQPDICSQICINLPGSYKCDCKDGFEIDPATKTCKAESGTVPTLYFTNRHEVRKMT
VDRREYVHVIPQLKNAVALDMDMPNKIMFWSDLSLKKIYSSSIDLASNSSYHSVVIGSEI
KAPEGIAVDWLHGNIYWTDSIMKTISVATTDGSKRKTLITENLEKPRAITVDPVNNFMYW
TDWGEEAKIEKSGLNGADRVTLVKDNIVWPNGITLDMVNQRLYWVDSKLHTLSSIDVNGG
TRHTVIFDVEKLSHPLSLAVFEEKVFWTDTSNDAVFSANRQTGKDITELAGNLNHPEDII
LYHNLMQPSGVNWCSGSNRMNGGCEFLCLPAPQINQRSPKYTCACPDHMTLGTDMRTCVT
GAVVPPGDASLPATTTTKPTTPKQPVPTTTTTTTDIRATEKLSTISAFKTTQRTQQSSAD
AQGNRASMPKEAPASHPIALYAVLPIMLITVLVVGAMLLRRRWRLKNTNTIHFDNPVYQK
TTEDEVHICRNSSDGYVYPQRQMLSMEDMDIA
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggatgtggaggacactcgcaggactgtccacatgctggtgtgtcctggtgctg
attcactgttcgactccatcagatgcagcgttcacgtgcagctccactcagctcaagtgt
ggaaatgggaggtgtgtgacacgcaagtggatctgtgatggatccgacgactgtggtgat
ggaactgatgaactgcctgagacctgtgcgaccaaaacctgtctggagtcagagttcaac
tgtggcctccccacgaaccagtgtatctcgggaaagtggcactgcgatggagcaaacgac
tgtgacaacggggccgacgagaagaactgcacggccaaagagtgtagcgctgaagagttc
cgatgtgccaacggccagtgtatatccaaatccttcgtctgcgacagtgagaacgactgc
tcggacggctcggacgaggcctcctgtgtcaagcccacgtgcaactcgcgatccttccag
tgccacaactcggtgtgcatgccaagtacgtggcgctgcgatggcgacgaggactgcgcg
gacgggtccgacgagtggccggagaactgtgtgggagagcagccgaagaagacggaaccg
ctctgccagagtcacgagtttcagtgtgccaacggggaatgtatccacggcagttggagg
tgtgacggaggcacggactgccgggatcgatcggacgagatcaactgcagtcgagctact
tgtcgtccagatgaattccagtgtaatgacggcacctgtatccatggcagcctccaatgt
gacaaacggcccaactgcagggacctcagtgatgagattggctgcaacatagaaaatgaa
tgtgaaggtccgactaagttcaaatgtagcagtggggagtgcatcagcgcggagaaggtg
tgtgacgaacggagagactgcgcggacggttctgatgaacctgtcaaagagtgtggcaac
aacgagtgtctgacagaaaacggtggctgttcccatgtttgtagcgatctgaaggtcggc
tacaactgctcgtgcccttctggtttcagtctgaaggtggacaagagaacgtgtgaagac
gttgatgaatgtgctcagccagacatttgcagtcagatttgcatcaacttgccaggcagc
tacaagtgcgactgcaaggatggctttgaaatcgaccccgcgaccaaaacatgcaaggct
gaatcaggcactgtgccaaccctgtacttcaccaacagacatgaggtgaggaagatgaca
gtggaccgcagggagtacgtccatgtgatcccacagctgaaaaatgcagttgctctggac
atggacatgccaaacaagataatgttctggtctgacttatcgctgaagaaaatctacagc
tccagcatcgacttggcgagtaactcctcttatcactctgtggttattgggagtgaaatc
aaggctccagagggcattgcagttgactggctccacggcaacatctactggactgacagc
attatgaagaccatctctgtagcaacaacagacggcagcaagaggaagaccctcattaca
gaaaacctggaaaagccgagagccatcaccgtggacccagtaaataacttcatgtactgg
acagactggggtgaggaggctaagatagagaagagcggattgaatggagcggatcgtgtt
actctggtgaaagataacattgtgtggcccaatggcatcaccctggatatggtcaaccag
cgtctgtactgggtggactccaagttgcacacactctccagcattgacgtgaacggcggc
acaagacacactgtcatttttgacgtggaaaaactctcccaccctctttccctcgctgtg
tttgaggagaaagtgttttggaccgacacaagcaatgacgctgtctttagtgccaaccgt
cagacaggaaaggatattactgagctggcagggaacctgaaccatccagaggacatcatc
ctctaccacaacctcatgcagcccagcggtgtgaactggtgcagcggaagtaacagaatg
aatggagggtgtgagttcctgtgcctccccgctccccagatcaaccagcgctctccgaag
tacacctgcgcctgtcccgatcacatgaccttgggaactgacatgaggacgtgcgtgaca
ggcgcagtcgtccctcctggtgatgcgtcgctcccagctacaaccaccaccaagcccacg
acacccaaacagcctgtccccactacaacgacaacgacaaccgacatcagagcaacagaa
aaactctcaactatctcagcctttaagaccacgcagagaacacagcagtcatctgctgac
gctcaaggtaacagagcatccatgcccaaagaggcccctgcctcccaccctattgctctc
tatgccgtgttgcctataatgctcatcacagtgctggtcgttggagcaatgttgctgagg
agacgctggcgtctgaagaacaccaacaccatccactttgacaatccggtgtaccagaaa
accacagaggacgaggtgcacatctgcaggaacagctccgatggctatgtttatcctcag
aggcaaatgctgagcatggaggacatggatattgcataa
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