Solea senegalensis (Senegalese sole): 122778912
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Entry
122778912 CDS
T07721
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122778912 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssen03000
]
122778912 (kdm2ab)
04121 Ubiquitin system [BR:
ssen04121
]
122778912 (kdm2ab)
03036 Chromosome and associated proteins [BR:
ssen03036
]
122778912 (kdm2ab)
Enzymes [BR:
ssen01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
122778912 (kdm2ab)
Transcription factors [BR:
ssen03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
122778912 (kdm2ab)
Ubiquitin system [BR:
ssen04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122778912 (kdm2ab)
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
122778912 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122778912 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
Cupin_8
LRR_6
LRR_8
C1_1
LRR_4
Cupin_1
Motif
Other DBs
NCBI-GeneID:
122778912
NCBI-ProteinID:
XP_043897001
LinkDB
All DBs
Position
LG12:8577533..8590551
Genome browser
AA seq
1298 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLQCERFGTELVKHMDGKDF
TFEYIQKEGLRDPIVFDRADGLGLQMPDPDFSVSDVKLFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGEKVFWLIPPSPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRILLHQGNTFIIPSGWIHAVYTPQDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQKYSLGTG
LTPPHDNNHPGNGTINGDEIDTEKPAVKEEVKEENEVYPVTKPQHLLTPFEMEGLGNLLG
KLEELPAHKKCVPVGIRNATSLLEDMRAVLKEHANDNAKLSYTGEPIVKWPERPSWYQPP
IPPQPILCRPRLGPTLHRQLGQRPNKRSNISALRRRRVRCKRCAGCCRKECGNCQFCHDM
RKFGGPGRMKKGCITRQCLAPALPNTARCAICREGESDESDPSTHSLMECSVCSQIAHRR
CIKEPGEGKINKDLPSCWECPKCYQGKGSGSESSSESGEESGESEASSSMPPSKLAHREG
IGVGEAARQGGRNHPQSRSTAPPPSQKLLLQHQQNRKRANELELRLKKRIKLERSKLLVK
QSTLDRSPRHLRSRLLSRLRSPTSRLSQGRGQGSTWASGSLHSSSVGGTRSFQQQESSHG
LIFESKGEPRRGRGRGVRLRGGGAGRGIRGGRDHGDLEEESEDSSSSSTSSSSSSDEEEE
REQNNGRGGDKENQPQSGRGGLTAKGEEEGSEVANQHCADEEDEEVEQDSQPRDKDNSYL
KVTLQRPTRAKQDPSAIVPKLEAIAPQTATSTIHNQTKALARPPIRNHGPSSDHPSSRHT
PPLTRSGHTANRTSHQERLEDSKRQRPSRPAKLSNGASCSSSSDFTHLRIPLSTLQEGGS
EADRESGLSAPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRLWTRIDLSIKRT
VTPQALTGIIKRQPVTLDLSWTNISKKQLNWLIGRLPGLKDLMLAGCSWSSISALCSSGC
PLLRSLDLRYADGVKDSQIRDLVSPPGCDNRSQLRTMHCLRLAGLDITDSTLRLVIRHMP
HLTKLDLSHCNSLTDHSINLLTAVGSSTRNTLTELNLGGCSKLTDTCLKYLRRLSCISVL
DLRGCKGVSRKACETFISELSVNTLYCLSDEKLIQRIS
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggaggatccccatacacggtacagcaaacgcctgcgtacaggtacgcggcgccgttac
caagacgatgggatctcagatgatgaaattgaaggtaaacggacgtttgacctggatgaa
aagttgcaatgcgaaaggttcggcactgaattggtcaaacacatggatggcaaagatttt
acatttgaatacattcagaaggaagggctcagggatcccattgtctttgatcgtgccgat
ggccttggcctacaaatgccagacccagatttcagtgtgagtgatgtcaagttgtttgtt
ggtagtcgacgaatcgtcgacgtgatggacgtgaacactcagaagggaatcgagatgtca
atggctcagtggcgacgttattacgagacaccaccttcagaaagagaaaagttgtataat
gttatcagtcttgagttcagccacaccagactggagaatcttgtcaaacgaccagcttcg
gtggaccttattgattgggtagacaacatgtggccacgccatctcaaagagagacagaga
gactccaccaatgccatcatagatatgcattatcctaaagtacaaaagtactgtcttatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttcagtgtggtat
cacatcctacgaggagaaaaggtgttctggttgattccaccctcaccacagaatctggag
atgtacgagaactgggttttatcaggaaagcagggagacatcttcttgggggacaagtgt
catgactgtcaaaggatactactccaccaaggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacaccccacaagacacactggtgttcggtgggaatttcctccacagt
tttaacattcccatgcaacttaacatctacagcattgaggatcgcacacgggtgccagca
aagttccgctaccctttctactatgagatgtgctggtatgtcctggagagatacttgtac
tgcctgaccaacatctcccacctcacacctgagttccaaaaatactcccttggcacaggc
ctgaccccacctcatgacaataatcatcctgggaatggcactatcaatggagatgagatt
gacactgaaaaaccagcagttaaggaagaagttaaagaagaaaacgaagtatatccagtt
accaaacctcagcatttgctgactccctttgagatggagggactggggaatctcttgggg
aagctggaggagctgccagcccacaaaaagtgtgtccctgtaggcatcaggaatgccaca
tccctgctcgaggacatgagggctgttctgaaggagcatgccaatgataacgccaagctg
tcatacaccggagagcccattgtcaagtggccagaaaggccgtcatggtaccagccccca
attccccctcaacctattctttgccgtcctcgtctgggccctaccctccataggcaactg
ggccagagaccaaacaaacgctccaacatttccgccctgagacgacgacgggtgagatgt
aagcgctgtgctgggtgttgcaggaaggagtgtggcaactgccagttctgtcatgacatg
aggaagtttggtggccctggacgcatgaagaaaggctgcattacgaggcagtgtctagca
cctgcattgccaaacacagctcgatgtgccatatgtagagaaggtgaatcagatgaatca
gatccaagcactcactcactcatggagtgttctgtctgctcacagattgcccatcgtcgg
tgcattaaggaacctggtgaaggaaagatcaataaggatttgcccagctgctgggaatgt
cccaaatgttatcaaggcaaaggttcaggatcagagtcttctagtgaaagtggagaggaa
agtggagagtcagaggcatcatcctctatgccaccatccaagcttgcgcaccgggaaggc
attggagtgggtgaagcagcaagacaagggggacggaaccaccctcaatctcgatccaca
gcaccaccaccttctcaaaaactgttactgcaacatcagcagaatcgcaaaagagcaaat
gaactggagctaagacttaagaaaaggataaagctggaacgtagcaaactcttggtgaaa
cagtcaactctagatcgctctcccaggcatctgagatccaggctgctgtcacggctgcgc
tctccaaccagcagactatctcagggtagaggtcagggctccacttgggcgagtggttcc
cttcactccagctctgtgggagggaccaggtccttccaacagcaggagtcttcccatggt
ctgatatttgagtccaaaggagagccccgcagagggaggggtagaggggttcggctacga
ggaggaggagcaggaagaggaatcagaggtgggagagaccatggagacttggaagaagag
agtgaagacagcagcagcagcagtaccagcagcagcagcagtagtgatgaggaagaggag
agggagcagaacaacggcaggggaggggataaggagaaccagccacagtcgggaagagga
ggactaacagccaaaggagaggaggaagggagtgaggtagccaatcaacattgtgcagac
gaggaagatgaggaggtggagcaggacagtcaaccaagggataaggacaactcatatctt
aaagtgacactccaaaggccaaccagggccaagcaggacccatcagccattgttcccaaa
ttggaggctattgccccccaaactgctacttccacaatacacaaccagactaaagctctt
gccagacccccgattagaaatcatggcccctcttctgatcatccctccagtaggcacacc
cccccacttacacgcagtggacacacagctaatcgcacctcccatcaagagaggctggag
gactcaaaaagacagaggccgagcaggccagctaaactgagcaatggcgcttcctgttct
tcatcctcggattttacacatcttcgcatccctctgtccaccctgcaggaaggagggagc
gaggcagacagggagagtggtctcagtgcgccgggctgtgagagggaggtgtgggtgtcc
gtcttccgctacttaagtagagcagatctctgtgtctgcatggctgtctgtaagaactgg
tataaatggtgtttagacaagcggctttggacgcggattgacctaagcataaagcgcact
gtcactcctcaggctctgactgggatcataaagagacagcctgtgacactcgatctctct
tggaccaacatctcgaaaaagcagctcaactggctcattggcagacttcctgggctgaag
gatctgatgctggcaggttgttcctggtcatctatttccgctctctgctcctctggttgc
ccgctcctccgttctctagacctgcgatatgcagatggagtcaaagactctcagatcagg
gatttagtcagccctccaggttgtgacaatcgtagtcagttgcgtaccatgcattgtttg
cgactagctggcctggacatcactgactccactctgcgcctggtgatccgccacatgccc
catttaacaaaactagacctctcccactgcaacagcctcaccgaccactccatcaacctg
ctgacagcagtaggctcatctacccgcaacacgctcacagaactcaacctgggaggctgc
agtaaactgacagacacgtgtcttaagtacctccgccgactctcatgcatctcagtgctt
gacctgcgaggctgtaaaggagtttcccgtaaggcttgtgagaccttcatctctgagctg
tcagtcaacacactctactgcctatctgatgaaaaactgatccagaggatatcctaa
DBGET
integrated database retrieval system
