Solea senegalensis (Senegalese sole): 122779651
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Entry
122779651 CDS
T07721
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122779651 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122779651 (smg6)
03032 DNA replication proteins [BR:
ssen03032
]
122779651 (smg6)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122779651 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
122779651 (smg6)
DNA replication proteins [BR:
ssen03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
122779651 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
122779651
NCBI-ProteinID:
XP_043898140
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All DBs
Position
LG13:complement(17029852..17043921)
Genome browser
AA seq
1660 aa
AA seq
DB search
MANELERVRISAAELRAEASNAVNYGTGGQKEEQQHVPKQHRKRDEKRPDLQRYQPLAGP
GRRHRDSEEGDSGQSDPMPTYLHEQEKPLQSEKKCVSEKVSGGTNETGTDQRVGGDGSNT
HNGRKGICSPVKTEANQEKGLVDHDVEHLEPAGAAKLAKKARKPDREFYQPGSRRNISGK
DCGVGKEQDKPPPKKLEHKNEPEFQQSTEETEGNKTASPQKQRGKAKEVKGAHENVKTVK
STDINRKQGSRDVHKPPLPSDVSVEKVTSKVEELSVKGKGGREVQNVDEVTCRRGKTTDK
GRQSQGGVIKEEEEKIDRKREKGNRSRRGGEKEKERNLDSRGGGDGMSVGGKSVQGKDEK
ERDGRAAEADRNNKPCKTGETHQGKRRENCGESTRGNDNNNRSREAEKNARAERNLDKTV
ERVNRNKSNANIIAPSSKRYSKSDIRRSRNRTYSSSSASSVTSLDGPGFGKDVESSKWPR
LQPKPSNKDEMVSSREGQRGRLQSWPTNGESSTESLEGFEINDIAENRRRRRRGGEEELS
ATRRREERNRPKGGRGEGRAIQRDSPEKPSGASSQSGETQHRKQGLVPRGRGGGILVLPA
HTDISNSPEVGQRLFGGIRGGAAAHSSRGGRGGGVRRLWDPNNPDQKPALTSSQSSQHKS
LQPPVYLQTGTGYGQLHFLDTDDEVAGSPPVQQGEHFRSQQAAAMAFYKFQNSDNPYCYP
MSTSNPQNPGTSSNQRYPYPYMGPYQMVPTNGVYQSPGVGQFSGSYKLGGYSQPRSGGGL
SLEEVEQQARGELGRLLRAADAHELQLSNLLSRDRVSADGLDRMAQLRADLLGLYEQVIL
TDIEFSDSQNVDQALWKNVFYQVIEHFRQLLKDPAHESTSYVRNMLLTLLDEGSLFFDTL
VQKLQTVYQFKLEDYMDGMAIRTRPLRKTVKYALISAQRCMICQGDIARYREQASDSANY
GKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMS
LFEEAKRKAEQLERRRKQEHDGGSKGPAVRGRGRGDEGARVEIWVRPTGQAATPSSQRGG
SESSRDSEQDGELGNLSASDLNKRFILSFLHAHGKLFTKVGMESFPAVASRVLQEFRLLL
QHGPSLLGSTQMLQIITINMFTIHNAHNRGEEGEVRSVLQEQSTALGLGMFAVLVQHCTE
LLSDTPAESVPATDGEEDSTGARPNGMVRVSAFPLNLRELLPSMKVWSDWMLGHSDLWNP
PPCSIDCSPDVWQCLADLCNALARVHHGELPLYKVDTDEVEGDEELTVLQLKEDRLLAGF
IPLLAAPQEPCYTDRHTEMTIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYISVAASL
PPNHHSVDRGRQDSITEKEADDVIVEAESSPSASGDEDADEAGGSENDIKQLKARRHALA
NKLAQQQKRRDKIQAMLQMSGQLELEVRPLFLVPDTNGFIDHLDGLRKLLQCGTYIIVVP
LIVITELDGLAKGQDNFGGEVGSGGRNSYSRGNYNVSVAHVRSVQEKARLAVDFLEKAFE
AREPCLRALTSRGNQLESIAFRSEDTSGQQGNNDDVILSCCLHYCKDKAKDFMPEQRNGT
VRLQREVVLLTDDRNLRVKALTRNVPVRDISAFLSWAKVG
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaactggaaagagtgcgaatctcagcggcggaactccgtgctgaggcgtcg
aatgcagttaattacggtactggcggccagaaagaggagcagcagcatgtacctaagcaa
cataggaaacgtgacgaaaagcgacctgatctgcagcgctaccagcctttagctggacct
ggacgacgtcatcgtgacagcgaggagggggattctggtcaaagtgatccaatgcctact
tatttacatgagcaagaaaagccactgcagagtgagaaaaagtgtgtctctgaaaaagtt
tcagggggcacaaatgagacaggcactgaccaacgggttggaggtgatggtagtaacact
cataatggaagaaagggcatctgctcacctgttaaaacagaggcaaatcaagaaaaaggc
ctcgttgatcatgacgtggaacatttggaacctgctggagctgcaaaactggcaaagaaa
gcccgcaaacctgaccgtgaattttatcaaccagggagccgaaggaacatctctggaaag
gactgtggagttggaaaagagcaagataaacctccacctaagaaacttgagcataaaaat
gagccagaattccagcagagtactgaagaaacagagggtaataaaacagcatctcctcaa
aagcaaagagggaaggctaaagaagtcaaaggtgcgcacgaaaatgtaaaaactgttaaa
tccactgatataaacagaaagcaaggaagcagagatgttcacaagcctcccttaccctct
gatgtttctgtggaaaaagtaaccagcaaggtagaagaactctctgtgaaagggaaaggt
ggacgtgaagtccaaaatgttgatgaggtaacctgtaggagagggaaaacaactgataag
ggaagacaaagccaagggggcgtcataaaagaagaggaagaaaagatagacaggaagagg
gaaaaaggaaaccgcagtagaagaggaggggagaaagaaaaagaaagaaatttggattcc
agaggaggtggggatggcatgagtgttggaggaaaaagcgtccaggggaaagatgaaaaa
gagagagacggtagagcagcagaagcagataggaataacaaaccctgtaagactggagag
acgcaccaaggcaaacgcagagagaactgtggagaaagcacaagaggaaatgacaacaac
aatcggtccagagaagctgagaaaaatgcaagggcagagagaaatttagacaaaactgta
gaaagagtaaatagaaacaaatccaatgccaacatcatagcaccatcctcaaaacgatat
tccaaatcagatatacgacgctcacgcaatcgaacttacagcagtagctcagccagcagt
gtgaccagcttggatggtccaggattcgggaaggatgtggaaagctctaagtggccacgc
ttgcagcctaagcccagtaacaaagacgagatggttagtagcagagagggacaaagaggt
cgcctacaaagctggccaactaatggggaatcttctacagaatcactagaagggtttgag
atcaacgacattgcagaaaacagaagaagaagaagaagaggaggggaggaagagctaagt
gcaacaaggaggagagaagaaaggaaccgaccaaagggaggccgaggtgaaggtagagca
attcaaagagattcacctgaaaaaccttctggtgcctcatcacaaagtggagaaacacaa
catcgcaagcaaggcttggttcctcgtggcagaggtggaggtattctggtgcttccagcc
cacacagatatctctaattcacctgaggttggccaaagacttttcggtggaatcagggga
ggagcagcagcacacagtagtagagggggtagaggaggaggagtgagacgactgtgggat
ccaaataacccagatcagaaacctgctcttaccagcagtcagtcctcacagcacaaatcc
ctccaaccgcctgtatatcttcaaacaggtactggatatggacaacttcattttctagac
acggatgatgaggttgcaggcagtcctccggtccagcagggcgaacactttcgatcacag
caggctgctgccatggcgttctacaaattccaaaactctgacaatccctactgctaccct
atgtccaccagcaatccacaaaatcctggcacctcctcaaaccagcgctatccatatcca
tatatggggccctaccaaatggttcccactaatggtgtgtaccagagccctggtgtggga
cagttcagtggtagttacaagttaggaggttattctcagcctcgttcaggaggtggtttg
tcacttgaagaagtggagcaacaagccagaggggaactggggaggctgttaagggcggca
gatgcacatgagcttcaactcagtaatctgctgtccagggacagagtgagtgctgacggt
ctggatcgcatggcccagctcagagcggaccttttggggctctatgaacaagtcatcctc
acggacattgagttctcagattctcagaatgtggaccaggctttatggaagaacgtgttt
tatcaggtcatagagcacttcaggcagttactcaaagaccctgcacacgagagcacctct
tatgtcaggaacatgttgctcactctacttgacgagggatcacttttctttgatacactg
gtccagaagctacagacagtgtaccaatttaaattggaggattacatggatggcatggcc
atcaggactaggccattacgcaaaacggtaaagtatgcacttatcagtgctcagcgctgt
atgatttgccagggagatattgcacgttaccgggaacaagccagtgactcggccaactat
ggcaaggctcgcagctggtacctgaaagcccagcaaattgcccccaaaaatggacgacca
tataaccagctggccctactggcagtctacacaaaaaggaagttggatgccgtgtattat
tacatgcgcagtttggctgcttccaaccctatcctgactgccaaggaaagcctgatgagt
ctgtttgaagaagccaaacgaaaggcagagcaacttgagcgaaggaggaagcaggagcat
gacggaggctctaagggtccagcagttagagggagaggaaggggggacgagggagcgcgc
gtggagatctgggttcgccccactggacaagctgcaaccccgtcctcgcagagaggaggc
agtgagtccagcagagactctgaacaggatggagagctgggcaatctcagtgccagtgac
ttgaataaaaggttcattctgagtttcttgcatgctcatggaaagctcttcaccaaagtg
ggcatggaatcgttccctgcagtggcgagtcgtgttctgcaggagttcaggttgctgctc
cagcatggaccttccctgctgggcagcacacaaatgctgcagatcatcaccatcaacatg
ttcactatacacaatgcccacaatagaggtgaagaaggagaagtgcggtctgttctacaa
gagcaaagcacggccctgggtctcgggatgtttgccgttttggtccaacactgcacggag
ctgctcagtgatactcctgcagaatcggtccccgcgacagatggggaagaggacagtaca
ggggcgaggccaaatggtatggtgagagtctctgccttcccactgaatcttagagaacta
ctgccgagcatgaaggtgtggtctgactggatgttgggacactcggacctgtggaaccca
ccaccatgcagtatagattgtagccccgatgtttggcagtgtctggcagacctgtgtaac
gcgctggcgcgcgtgcaccacggcgaacttcccctgtacaaagtcgacactgacgaggtc
gagggcgacgaggagttgacggtgctgcagttgaaggaggacaggctgcttgctggtttc
atacctctgctggctgcaccgcaggagccctgttacactgacagacacactgaaatgaca
atagcagcagattgtaagagagtgaccgtgctgaagtactttctggaggcattgtgtgga
caggaagagcctttgttggccttcaaaggaggaaaatacatctctgtggcggcctcttta
ccacctaaccatcactctgtggatcgaggcagacaggattctataacggaaaaagaggct
gatgatgttatagtcgaggcggagtcgtctccatctgcatcgggagatgaggacgcagac
gaggcgggaggtagcgagaatgacatcaagcagctgaaggcacgacgccatgcccttgcc
aacaaactcgcacagcaacagaagcgcagggataaaatacaggcaatgctgcaaatgagt
gggcagttggagctggaagtgcgcccactgttcttggttcctgataccaatggattcatt
gatcatttggacgggctgaggaaacttcttcagtgcggaacatacataatagttgtgccg
cttattgtaattacagagttagatggcttggctaaaggccaggacaactttggtggtgaa
gtgggttcaggaggtcgcaactcgtacagccgtggcaactacaatgttagcgtggcccac
gtgcggtctgtgcaggagaaggcccgattggcagtggatttcttagagaaagcgtttgaa
gccagggagccgtgcctcagagccctgaccagccggggtaatcagctcgagtctatagcc
ttccgcagtgaagacacctctggacaacagggtaacaacgacgatgtgattctgtcctgc
tgtctccactactgtaaagacaaggcaaaggacttcatgcctgaacagagaaatgggacg
gtgaggctccaaagagaggttgtgctccttacagatgaccgcaacctgcgcgtcaaagct
ttgactcgcaacgtcccggtccgagacatctctgctttcctcagctgggccaaagtgggg
tga
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