Streptomyces seoulensis: D0Z67_20605
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Entry
D0Z67_20605 CDS
T07029
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sseo
Streptomyces seoulensis
Pathway
sseo03030
DNA replication
sseo03410
Base excision repair
sseo03420
Nucleotide excision repair
sseo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sseo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0Z67_20605 (ligA)
03410 Base excision repair
D0Z67_20605 (ligA)
03420 Nucleotide excision repair
D0Z67_20605 (ligA)
03430 Mismatch repair
D0Z67_20605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sseo03032
]
D0Z67_20605 (ligA)
03400 DNA repair and recombination proteins [BR:
sseo03400
]
D0Z67_20605 (ligA)
Enzymes [BR:
sseo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D0Z67_20605 (ligA)
DNA replication proteins [BR:
sseo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D0Z67_20605 (ligA)
DNA repair and recombination proteins [BR:
sseo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D0Z67_20605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D0Z67_20605 (ligA)
MMR (mismatch excision repair)
DNA ligase
D0Z67_20605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D0Z67_20605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QBJ92456
UniProt:
A0A4V0ZZW0
LinkDB
All DBs
Position
4408070..4410265
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAATTAVPAEARERHGRLAEQVEEHRFRYYVKDAPVVSDAEFDQLLKSLEALEEE
FPELRTPDSPTQKVAGSYETEFTAVAHRERMLSLDNTFNDEELAAWADRIARELGDQTYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTITDIPERLHGDRVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGA
HEGFEGLTRLSEAYDLLKTWGLPTSPHNRVVDGLDGVREFIAYYGEHRHSVDHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECP
ECGTPLRPMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVAAAALTRPLEP
ADPPLVDEGDLFDLTVEKLLPIKAHVLDPDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LSLLEHIEAAKQRPLARFINGLSIRHVGPVAAQALAREFRSVDRIEAATEEELAATDGVG
PIIAAALKEWFAEDWHREIVRKWKAAGVPLEEAAGDEDEGPRPLEGMTVVVTGTLENFTR
DGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEDGFTVLLERGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggcgacgacggcggtgcccgccgaggcgcgcgagaggcac
gggcggctcgcggagcaggtcgaggaacaccgcttccggtactacgtgaaggacgctccc
gtcgtcagcgacgcggagttcgaccagctgctgaagtccctggaggccctggaggaggag
ttcccggagctgcgcaccccggactcgcccacccagaaggtcgccgggtcctacgagacg
gagttcaccgcggtcgcgcaccgcgagcggatgctgtccctggacaacaccttcaacgac
gaggaactcgccgcctgggccgaccgcatcgcccgcgaactgggcgaccagacctaccac
ttcctgtgcgagctgaaggtcgacggactcgccgtcaacctcacctacgagcacggccgc
ctcacccgcgccgcgaccaggggcgacggccgcaccggtgaggacatcacgcccaacgtc
cgcaccatcaccgacatccccgagcgtctgcacggcgacagggtgcccgacctcgtggag
atccgcggcgaggtctacttcccgatggaaaagttcctggagctgaacgagcgtctggtc
gccgccggggacaagcccttcgccaacccccgtaacgcggccgccggttcgctccgtcag
aaggacccccgcgtcaccgcgagccgcccgctgcacatggtcgtccacggcatcggcgcc
cacgagggcttcgagggcctgacccggctctccgaggcgtacgacctgctgaagacctgg
ggcctgcccacctccccgcacaaccgcgtggtcgacggcctcgacggcgtacgggagttc
atcgcgtactacggcgagcaccggcactccgtggaccacgagatcgacggggtcgtcgtc
aagctcgacgagatccgcctccagggccggctcggctccaccgcgcgcgccccgcgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctgatcgacatcaaggtg
ggcgtcggccgcaccggccgcgtcaccccgtacgcccaggtcgagccggtcacggtggcg
ggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggggacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggg
ccggtcgccgacctccgggacggcagcgagcgggagttcgtgatgcccagcgagtgcccc
gagtgcgggacgccgctgcggcccatgaaggagggcgacatcgacctccgctgccccaac
gcccgtgcctgcccggcccagttgcgggagcgggtcgcctatctcgcgggccgcgagtgc
ctggacatcgagcacttcggcggggtcgcggccgccgcgctcacccggccgctggagccc
gccgacccgccgctggtggacgagggcgacctgttcgacctcacggtggagaagctgctg
cccatcaaggcgcatgtgctggacccggacagcgggctgcccaagcgcgacccgaagacc
ggcgaggagaaggtcgtcaccgtcttcgccaaccagaagggcgagccgaagaagaacacc
ctctccctgctggagcacatcgaggccgccaagcagcgcccgctggcccggttcatcaac
ggcctctccatccggcacgtcggccccgtcgccgcccaggcgctcgcccgcgagttccgg
tcggtcgaccgcatcgaagcggccaccgaggaggagctggccgccaccgacggagtcggc
ccgatcatcgcggccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcgtg
cgcaagtggaaggcggccggggtcccgctggaggaggccgccggggacgaggacgagggg
ccccgcccgctggaggggatgaccgtcgtcgtcaccggcacgctggagaacttcacccgg
gacggcgccaaggacgcactccagagccggggcgcgaaagtgaccggttccgtctccaag
aagacctccttcgtggtcgtcggcgacaaccccggctccaagtacgacaaggcgatgcag
ctcaaggtgccggtgctcgacgaggacggattcaccgtcctgctggagcgcggacccgag
gcggcggccgaagtcgcgcttccgaccggggagtag
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