Streptococcus suis A7 (serotype 2): SSUA7_1035
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Entry
SSUA7_1035 CDS
T02020
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssf
Streptococcus suis A7 (serotype 2)
Pathway
ssf03030
DNA replication
ssf03410
Base excision repair
ssf03420
Nucleotide excision repair
ssf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSUA7_1035 (ligA)
03410 Base excision repair
SSUA7_1035 (ligA)
03420 Nucleotide excision repair
SSUA7_1035 (ligA)
03430 Mismatch repair
SSUA7_1035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssf03032
]
SSUA7_1035 (ligA)
03400 DNA repair and recombination proteins [BR:
ssf03400
]
SSUA7_1035 (ligA)
Enzymes [BR:
ssf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSUA7_1035 (ligA)
DNA replication proteins [BR:
ssf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSUA7_1035 (ligA)
DNA repair and recombination proteins [BR:
ssf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSUA7_1035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSUA7_1035 (ligA)
MMR (mismatch excision repair)
DNA ligase
SSUA7_1035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSUA7_1035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
A24_N_bact
RNA_lig_T4_1
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
AER44357
LinkDB
All DBs
Position
complement(1065479..1067437)
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG
GKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAVDITVRGECYMPKASFDRVNKQRQ
EAGEAEFVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFV
TNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIPSHCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLTVDDLLTLEGFKEKSAN
KLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQ
VIAKSLTTFFASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNE
AKAKLEALGANVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaatatcagaattagttagcgtgctcaatcaatacgctaaagagtattat
caattggaccaacctagcgtatcagatgcagaatatgatacgctttatcgtgaattagta
gagctagaaacggctcatccagaactgattttaccagatagtcctacccatcgggtcggg
ggaaagatgctagacggatttgaaaaatatagtcatgtttatcctctttttagtttgcag
gatgccttttctcgtgaagagttagaagcttttgaccagcgagttcgcaaggaatttcct
caagcaacgtatatctgtgaattgaagattgatggtctgtctatttccctgacctatgaa
gcgggtaatttagtcgtgggtgctacacgtggtgacggtagtgtcggtgaaaatatcaca
gaaaatctcaaacgagtggctgatgttcctttgaccttacccgaagctgtggacatcact
gtccgaggtgagtgttatatgccaaaagcttcctttgaccgtgttaacaaacagcgtcag
gaggctggtgaagctgaatttgttaatccgcgtaatgcagcagcagggaccctccgccag
cttgatacgggagtggtggcccagcgtggtctcgctactttcctctaccaagaggctagt
ccatctgaagcgactagtcagtcacaagtactggagaaactggatgctctgggatttgtg
accaaccacgaatattgcttggcggagtcgattgatgacacgtgggattttattgaaaaa
atagcagagcgtagagatgatttaccctatgagatagatggtgttgtcatcaaggtaaat
gatttagctatacaagaagaactaggatttacagttaaagcgccacgatgggcagtagct
tacaagtttccagctgaggaaaaagaagcagaaatcttgtcggttgattggactgttggc
cgaacaggtgttgtgacaccaacggccaatcttagtcctgttcaactggcaggaacgact
gtcagtcgagcaactttgcataacgtagattatatcgccgaaaaagatattcgtattggc
gatacggtcattgtttataaggcgggagatattattccagcagttctgaaagtggtggac
aagtatcgaaaagagcaagaaatcatgcccattcctagtcattgtccgtcttgtcagagc
gacctacaacactatgaggacgaagttgccctccgctgtatcaaccctatttgtcctagc
cagctgatgagtaagttggaacattttgcaagtcgggatgctatgaatatcgcagggcta
gggtcttcaatcgttgaaaaactctttggagcaggcttggtacacgatgttgctgatatt
tataaattaactgttgatgacctattgaccttggaaggtttcaaagaaaaatcagctaac
aagctctatcaagccattcaaacttctaagagtaactcagcagaatgcctcctatttgga
ctaggtattcgccatgtaggtagtaaggcaagtaagattttagtagaaaaatttggtgat
ttagaaactctagcatttgctgatcaagaagcaattgcttcgctagaaggtcttggtcag
gttattgctaagtctttgacaactttttttgctagtgagggtgcgcaacaacttttagcc
gaacttaaggaagctaaggtaaacttaacctatctcggccaagtagtagatgaaaatgct
gcgctatcgggtatgacagttgtactgactggtaaattggagcgaatgaaacgaaacgaa
gccaaagccaaattagaagctttaggggcaaatgtagcgggatctgtttctaaaaaaact
aatcttgtggttgccggaacagatgcaggcagtaaattgaccaaagcacaggagctaggt
attgaaataaaagatgaggcttggttagagagcttgtaa
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