Selenomonas sputigena: Selsp_1140
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Entry
Selsp_1140 CDS
T01474
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssg
Selenomonas sputigena
Pathway
ssg03030
DNA replication
ssg03410
Base excision repair
ssg03420
Nucleotide excision repair
ssg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Selsp_1140
03410 Base excision repair
Selsp_1140
03420 Nucleotide excision repair
Selsp_1140
03430 Mismatch repair
Selsp_1140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssg03032
]
Selsp_1140
03400 DNA repair and recombination proteins [BR:
ssg03400
]
Selsp_1140
Enzymes [BR:
ssg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Selsp_1140
DNA replication proteins [BR:
ssg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Selsp_1140
DNA repair and recombination proteins [BR:
ssg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Selsp_1140
NER (nucleotide excision repair)
GGR (global genome repair) factors
Selsp_1140
MMR (mismatch excision repair)
DNA ligase
Selsp_1140
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Selsp_1140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
BRCT_2
5_3_exonuc
A_deaminase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AEC00100
UniProt:
C9LTU2
LinkDB
All DBs
Position
1278169..1280178
Genome browser
AA seq
669 aa
AA seq
DB search
MDIQEVKKELAQLRRTIRHHNVRYYNDDNPEISDYEYDQLMLQLKALEREYPELITENSP
TQKVGGTAKRTAGTLVRHDVPMLSLQDVFSREEIEAFVRDIEARMENPVFVVEEKIDGLS
LALRYENGTLSRAITRGDGIVQGEDVTENAKVIKDVVQKLKEPLPYFEVRGEVYMTKAAF
EAVNERRQLIGLKLFANPRNCAAGTLRQLDSRITKERGLSLFVFNLQAVRGKDFQTHVEA
YDFMNRQGIKVIHAFHVCRTAEEVWDAIEQIGASRGDLPYDIDGAVVKLNDFSQRESLGA
TSKAPRWAIAYKYPPEEKESVVRSITLSVGRTGRITPTATFDPIRLCGTTVERATLHNQD
FIDDLDVRVGDTVVVYKSGEIIPKIKAVVKEKRPEGTEPFKIGDRCPVCGAKAEREADSA
DVKCINQACPAQVESHILNFVSRDAMDIKGLGEKNIAALIEKGFLHTIVDIFRLKEHREE
LISQGVVGKEKNTDKLLAAIEEAKKNEPQRLLTGLGIPGIGKAAAAALMQHFKTLEALEN
ASDEAILAVRDMGETSVAAIRSYFQNEGNAKICRELQQLGVATAVQERAAQGDELADMSF
VVTGTLRHFGRREITELIEQHGGRVTSSVSKKTDCLVAGENAGSKLQKAEQLGIRILTEE
EFLQLIGRK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatattcaagaagtcaaaaaagagcttgcacagttgcggcgcacgatacgtcaccac
aatgtgcgctactacaacgatgacaatcctgaaatcagcgattatgaatacgatcagctt
atgctgcagcttaaggcgcttgaaagggaataccccgagcttatcacggaaaactcgccg
acgcagaaggtcggcggtacggcgaagcgcacggcaggcacgctcgtgcgccacgacgtg
ccgatgctttccctgcaggatgtattctctcgcgaggaaatcgaagctttcgtgcgcgat
atagaggcgcgcatggaaaatcctgtgttcgtcgtcgaagaaaagatcgacggactttcg
cttgccctgcgctatgaaaacgggacgctgagccgtgccatcacgcgcggcgacggcata
gtgcagggcgaggacgtcacggaaaatgccaaggtcatcaaagacgtcgtacagaaactc
aaggagccgctgccttacttcgaggtgcgcggtgaggtctacatgacgaaggcggcattt
gaggcggtcaatgagaggcgtcagcttatcggactcaagctcttcgccaacccgcgcaac
tgtgcggcgggcactctgcgccaactcgacagccgcatcacgaaggagaggggactgtcc
ctcttcgtgttcaatctgcaggcggtgcgcggcaaggatttccaaacgcatgtcgaagcc
tacgacttcatgaaccggcagggcatcaaggtcattcatgcctttcacgtctgccgcacg
gcagaggaggtctgggatgccatcgagcagatcggcgcctcgcgcggcgatctgccctac
gacatcgacggcgctgtcgtcaaactcaatgatttttcgcaaagggagagccttggcgct
acttccaaggcgccgcgctgggcgattgcctataaatacccgcccgaggaaaaggaaagc
gtcgtgcgcagcatcacgctttccgtcggccggacggggcgcatcacgccgacggcgacg
ttcgatcccatccgcctttgcggtacgacggtcgagcgcgcgacgctgcacaatcaagat
ttcatcgacgatctcgatgtgcgcgtaggcgataccgtcgtcgtctacaagtcgggggag
atcattccgaagatcaaggcggtcgtaaaggagaaacgccccgagggaacggagccgttc
aagatcggcgatcgctgccccgtctgcggcgcaaaggccgagagagaggcggattccgcc
gacgtcaagtgcatcaatcaagcatgtccggcgcaggtggagagccacatcctgaatttt
gtgagccgcgacgccatggacatcaagggcttgggcgaaaagaacatcgccgccttgatt
gaaaaagggttccttcacacgatcgtcgacatcttccgcttgaaggagcatcgggaggag
ctgatttcccaaggcgttgtcggcaaggaaaaaaacacggataagctgcttgcagccatc
gaagaggcaaagaagaacgaaccgcagcgtcttttgacgggactcggtatccccggcatc
ggcaaggcggcagctgccgctctcatgcagcatttcaagaccttggaggctttggaaaat
gcatccgatgaagcgattctcgcggtgcgtgatatgggcgaaacgagcgtcgctgccatc
cgctcgtatttccaaaacgaaggcaatgcaaagatttgccgcgaactgcagcagctcggt
gtcgcaacggcagtacaagagcgtgcagcacagggcgacgaactggccgatatgagcttc
gtcgtcacgggcacgctgcgtcatttcgggcgcagggaaatcacggagttgatcgagcag
cacggcggacgcgtgacaagttctgtgtccaagaagacggactgcctcgtcgcgggagaa
aatgccggcagcaagctgcagaaggcggagcagctggggattcgaatcttgacggaggaa
gaattccttcagctgattggccggaagtaa
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integrated database retrieval system
