KEGG   Streptomyces alfalfae: A7J05_11365
Entry
A7J05_11365       CDS       T05110                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ssia  Streptomyces alfalfae
Pathway
ssia03030  DNA replication
ssia03410  Base excision repair
ssia03420  Nucleotide excision repair
ssia03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ssia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A7J05_11365
   03410 Base excision repair
    A7J05_11365
   03420 Nucleotide excision repair
    A7J05_11365
   03430 Mismatch repair
    A7J05_11365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssia03032]
    A7J05_11365
   03400 DNA repair and recombination proteins [BR:ssia03400]
    A7J05_11365
Enzymes [BR:ssia01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A7J05_11365
DNA replication proteins [BR:ssia03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A7J05_11365
DNA repair and recombination proteins [BR:ssia03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A7J05_11365
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A7J05_11365
   MMR (mismatch excision repair)
    DNA ligase
     A7J05_11365
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A7J05_11365
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: APY86230
UniProt: A0A1P8TF08
LinkDB
Position
complement(2849644..2851827)
AA seq 727 aa
MAVEQQGSVPAEARDQHAQLAEQIEEHRFRYYVKDQPVVSDAEFDKLLRSLEALEEEHPE
LRTPDSPTQKVSGSYETEFTAVEHRERMLSLDNAFDDEELAAWADRVAKDVGAPGYHFLC
ELKIDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIADIPERLEGDRVPALVEIRG
EVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREG
FDIDCLSHAYDLLREWGLPTAKHNKVVDGLQGVRDFIAYFGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQEVVKKKGVFIGDTVVIRKAGDVIPEILGPVADLRDGTEREFVMPAECPECGT
ALRPMKEGDIDLRCPNARTCPAQLRERLFYLAGRKSLDIENFGYVAAAALTRPLEPAEPP
ILDEGDIFDLKVEELLPIKSHVLDQDSGLPKRDPKTGEEKVVTFFANQKGEAKKNTLAML
ENIEAAKDRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQATEQELSETNGVGPVIA
ASLKQWFAEEWHREILRKWRAAGVRMEEESGGEDEGPRPLEGLTVVVTGTLEHHTRDGAK
EALQSRGAKVTGSVSKKTSFVVVGENPGSKYDKAMQVKVPVLDEAGFAVLLEQGPDAARE
VALPTEE
NT seq 2184 nt   +upstreamnt  +downstreamnt
gtggctgtcgaacagcaaggctctgtgcccgccgaggcacgggatcagcacgcccagctg
gccgaacagatcgaggagcaccgcttccggtactacgtgaaggaccagccggtcgtcagc
gacgcggagttcgacaagctgctgcgctccctggaggccctggaggaggagcacccggag
ctccggacgcccgactcgcccacccagaaggtctccgggtcgtacgagacggagttcacg
gcggtcgagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggagctc
gccgcctgggccgaccgtgtcgccaaggacgtgggcgcgccggggtaccacttcctgtgc
gagctgaagatcgacggcctcgcggtcaatctgacgtacgagaacggccggctgacccgc
gccgccacccgcggcgacggccgcaccggcgaggacatcacgccgaacgtccgtacgatc
gcggacatcccggaacgccttgagggcgatcgcgtccccgccctggtggagatccgcggc
gaggtcttcttcccgatggagaagttcgaggagctgaacgcccgcctggtcgaggcgggt
gacaagcccttcgccaacccgcgcaacgcggcggcgggttcgctgcgccagaaggacccg
cgcgtcaccgcgacccgcccgctgcacatggtcgtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctcagccacgcctatgacctgctgcgcgagtggggcctgcccacc
gccaagcacaacaaggtcgtcgacggcctccagggcgtccgggacttcatcgcgtacttc
ggggagcaccgccactccgtggagcacgagatcgacggcgtcgtcgtcaagctcgacgag
atcccgctccagggccgcctcggctccacctcgcgcgccccgcgctgggccatcgcctgg
aagtacgcgcccgaggaggtcaacaccaagctggtcaacatccgcgtgggcgtcggccgc
accgggcgcgtcacgccgtacgcccaggtcgagccggtcaccgtggcgggctcggaggtc
gagttcgcgaccctgcacaaccaggaggtggtgaagaagaagggcgtcttcatcggcgac
acggtcgtgatccgcaaggccggtgacgtcatcccggagatcctcggccccgtcgcggac
ctgcgggacggcaccgagcgggagttcgtgatgcccgccgagtgccccgagtgcgggacg
gcgctgcggcccatgaaggagggcgacatcgacctccgctgccccaacgcccgcacgtgc
cccgcccagttgcgtgagcgcctcttctacctcgcggggcgcaagtccctcgacatcgag
aacttcggctatgtcgccgcggcggcgctcacccgccccctggagcccgccgagccgccg
atcctcgacgagggcgacatcttcgacctgaaggtcgaggagctgctccccatcaagtcc
cacgtcctggaccaggactcgggcctgcccaagcgcgaccccaagacgggcgaggagaag
gtggtcaccttcttcgccaaccagaagggcgaggccaagaagaacaccctcgccatgctg
gagaacatcgaggcggccaaggaccgcccgctcgcccgcgtcctcacgggcctctccatc
cgccacgtcggcccggtggccgccgaggcgctggcccgcgagttccgctccatcgaccgc
atcgaacaggccaccgagcaggagctgtccgagaccaacggcgtgggaccggtcatcgcg
gcctccctcaagcagtggttcgccgaggagtggcaccgagagatcctccgcaagtggcgt
gcggccggggtgcgcatggaggaggagtcgggcggcgaggacgaggggccgcggccgctg
gagggcctgacggtggtcgtgaccgggacgctcgaacaccacacgcgcgacggcgcgaaa
gaggcgctgcagagcaggggcgccaaggtgaccggttccgtttccaagaagacctccttc
gtcgtcgtgggggagaacccgggttcgaagtacgacaaggccatgcaggtgaaggttccg
gttctcgacgaggccggcttcgccgtcctgctggaacaaggaccggacgcggcaagggaa
gtcgcgcttccgaccgaggagtag

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