Sporomusa silvacetica: SPSIL_036490
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Entry
SPSIL_036490 CDS
T10425
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03030
DNA replication
ssid03410
Base excision repair
ssid03420
Nucleotide excision repair
ssid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPSIL_036490 (ligA)
03410 Base excision repair
SPSIL_036490 (ligA)
03420 Nucleotide excision repair
SPSIL_036490 (ligA)
03430 Mismatch repair
SPSIL_036490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssid03032
]
SPSIL_036490 (ligA)
03400 DNA repair and recombination proteins [BR:
ssid03400
]
SPSIL_036490 (ligA)
Enzymes [BR:
ssid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPSIL_036490 (ligA)
DNA replication proteins [BR:
ssid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPSIL_036490 (ligA)
DNA repair and recombination proteins [BR:
ssid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPSIL_036490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPSIL_036490 (ligA)
MMR (mismatch excision repair)
DNA ligase
SPSIL_036490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPSIL_036490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
XFO67450
LinkDB
All DBs
Position
complement(3681794..3683824)
Genome browser
AA seq
676 aa
AA seq
DB search
MNTAIPASLTAAAQEVEELKKILHYHSHRYYVLDNPEISDTEFDKLLRRLIDIEAAYPSL
ITPDSPSQRVGGAPADGFERVAHLTSMLSLGNAFSAAELRSFDARVKSGLDSEAVEYVVE
LKIDGLAMNLVYENGRLKRGATRGDGTYGEDVTTNIRTIRSLPLVLNAAGSMPPLLEVRG
EVYLPRKEFDRLNKLREDAGEPLMANPRNAAAGSIRQLDSKITAERALDIFLYGLGTEEG
LGVATHSAMLEKLQSLGFKINPYYRVFANIEAAIEYCESWAEKRVDLPYDIDGVVFKVNS
LASQHALGSTAKDPRWAIAYKFPAEQAATVIEDIVVRVGRTGALTPTAELRPVRLAGTTV
SRATLHNADYIAEKDIRIGDTVIVHKAGEIIPEVVAVVTNRRTGSERMFVMPSVCPECCK
PIVRESGEVAHKCVNPYCPALLREGLIHFVSRNAMNIDGLGPAVIVSLLDAGLIKDAADL
YSLQPGPLAAVERMGGKSAANLVEAIAASKQAGLGRALFGLGIRYVGAKASAILARHYGD
IDILAAAGVEELIAIDEIGPKIAESVVSYFANAANLAYIEKLKAVGVKLTEERQTAASQE
LAGKTFVLTGTLSMARKEAEALIAACGGKVSSAVSKKTSYVLAGAEAGSKLDKANELGIP
VLTEEEFLVLVQKPEA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaataccgcaataccggccagtttgacggccgctgcccaggaagtagaagagcttaaa
aagatccttcactatcatagccatcgttactacgttcttgacaacccggaaatcagtgac
actgagtttgataagctgctacggcgccttattgacatcgaagccgcgtacccttcacta
attactcctgattcgcccagccaacgggtgggcggggcaccggctgacgggtttgagcgg
gtagcccatctgacatctatgttgagtttgggcaatgccttttctgctgctgagctgcgg
agctttgacgccagggtaaaaagcggcctggatagtgaagcggtagaatatgttgttgag
ctcaaaattgatggattggccatgaacctggtttatgaaaatggccgcctgaaaagaggg
gcaacccgcggtgatggcacatatggcgaagatgtgacaaccaacatccgcaccattcgg
tcgctgccattagtgctgaatgcggctggcagtatgccgccactcttagaagtgcgtggg
gaagtatatttgcccagaaaagaatttgacagactcaacaaactgcgggaagacgcaggc
gagccgcttatggccaatccccggaatgctgccgcgggctctattcgtcagcttgactcc
aaaatcacagctgaacgagcgcttgatatttttctgtatggcttaggtacagaagagggg
ctgggagtagcaacccactcggcgatgcttgagaagctgcagagtctggggttcaaaatc
aatccctactaccgggtatttgccaacattgaggctgcgattgaatactgcgaaagctgg
gcggaaaagcgggttgacttgccatatgacattgatggggtggtctttaaggttaatagc
ctggctagccagcacgcgttaggttcaacagccaaagatccgcgctgggccattgcctat
aaatttccggccgagcaggcggctaccgttatcgaggatatcgtcgtgcgggtaggacgc
actggggcgctgacaccaactgccgaacttaggcctgttagactggcggggactacagtc
agccgggctacccttcataacgctgactatattgcagaaaaagacattcgcattggcgat
acggtcattgtccataaagcgggagaaattatccccgaggtggtagctgttgttaccaac
cgccgtacaggcagcgaacggatgtttgtcatgccgtccgtctgtccggaatgttgcaag
cctattgtgcgtgagtcaggcgaagtagcccacaaatgcgtcaatccctactgtccggcg
ctgctaagagaaggtcttatccactttgtttcccgcaatgccatgaatattgacggattg
ggaccggctgtcatcgttagcttgctggacgccggtttgattaaggatgcggctgatttg
tatagcctacagcccggccccctggctgccgtggaacgtatggggggaaaatcagccgcc
aatctggtggaagccattgctgccagtaaacaagcaggcttaggcagagcgctatttggc
ctgggaatacgctacgttggtgctaaagcttcagccattcttgccaggcactatggcgat
attgacatcttggcagctgcgggtgtggaggaacttatagcaattgacgaaatcggtccc
aaaattgcggaaagtgttgtcagctattttgccaatgcggcgaacctggcttatatagaa
aagctaaaagccgtaggcgtaaagttgacagaggaacgccaaacagccgccagtcaggaa
ctggccggtaaaacctttgtgctcacaggcacactgtctatggctcgcaaggaggctgag
gccctcatcgctgcctgtggcgggaaagtatcttcagcagtcagtaaaaagaccagctat
gttttggcaggcgcagaagccggcagtaagctggataaagcgaatgaacttggtatcccg
gtcttaactgaagaagagtttctggtgctggtacaaaagcctgaggcatga
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