Solibacillus silvestris DSM 12223: SOLI23_16285
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Entry
SOLI23_16285 CDS
T04506
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03030
DNA replication
ssil03410
Base excision repair
ssil03420
Nucleotide excision repair
ssil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOLI23_16285 (ligA)
03410 Base excision repair
SOLI23_16285 (ligA)
03420 Nucleotide excision repair
SOLI23_16285 (ligA)
03430 Mismatch repair
SOLI23_16285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssil03032
]
SOLI23_16285 (ligA)
03400 DNA repair and recombination proteins [BR:
ssil03400
]
SOLI23_16285 (ligA)
Enzymes [BR:
ssil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SOLI23_16285 (ligA)
DNA replication proteins [BR:
ssil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SOLI23_16285 (ligA)
DNA repair and recombination proteins [BR:
ssil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SOLI23_16285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOLI23_16285 (ligA)
MMR (mismatch excision repair)
DNA ligase
SOLI23_16285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SOLI23_16285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
AphA_like
HHH_3
5_3_exonuc
BRCT_2
HHH_8
DUF7201
Motif
Other DBs
NCBI-ProteinID:
AMO87057
LinkDB
All DBs
Position
complement(3305600..3307597)
Genome browser
AA seq
665 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIYPDSPTQ
RVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKIEQAIGKNYSYVCELKIDGLAIS
LRYENGVFVQGATRGDGTVGEDITANLKTIRAIPLRLNEPVTLEVRGEAYMPKKSFEKLN
ERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGIDGHWEMLKY
LEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAHQDELGFTAK
SPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRASLHNEDLIR
EKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMPTHCPACDEEVVRIDTDVALR
CVNPQCPAQIAEGVKHFVSRNAMNIDGLGEKVVEQLLREGYIQDVAGLYELTVEQLINLE
RMGQKSATNLVEALIQSKDNSLERLLFGLGIRHVGEKAAKILAAHFETIDALMVATEEDL
KDIHEIGDKMAESIVAYFANEQVQQLIERLKGFGLNMSYKGKKIVVEAGANPFAGKTIVL
TGKLQQLTRNEAKAKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDEVRL
IEQLI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaatagaacaaagaattgcggaattaaacaagcttcttcatgagtatggctat
gcgtattatgtactggataaaccggtagtagaagatagtgtatatgatcagcttttacat
gaacttatcgcattagaagaagcaaatccggaatttatttatcctgattctcctactcag
cgtgtcggtggcatggtattggaaggctttaaaaaggtaacgcatgaaacagcaatgctt
agtttatcgaatgccttcaatgaagaagatttgcgtgattttgaccggaaaatcgagcag
gcaatcggtaaaaattactcctatgtatgtgaactgaaaattgatggtttggccatatct
ttacgctatgaaaacggggtttttgtacaaggcgctactcgtggtgacggaacggttggt
gaagatattacagccaacctgaagacaatccgtgccattcctttacgtttaaatgaacca
gtaaccttagaagtgcgcggcgaagcctatatgccgaaaaaatccttcgagaaactgaac
gaacgtcgagctgaaaatggcgaagagctatttgcaaaccctcgaaatgcggcagcagga
tcgttgcgtcaattagacccaaaaattgcggcaagccgaaatctatcgacttttatatat
gcagttggcggggatggagaaagctatggaatcgatgggcattgggaaatgctcaagtat
ttggaggagctaggttttccatcgaataaagagcgtgagtattgcgaaactattgaggac
gttttggcgtttatagaaaagtggacagaagcgcgcccaaatttatcgtatgaaattgat
ggtatcgtcattaaagtgaatcgctatgcccaccaagatgagcttggctttacggcaaaa
tcgccgcgctgggcaattgcctacaaattcccggctgaagaagtgataacaaaattacta
gatatcgaactgacggtaggtcgcacgggcgttattactccgacagcgattttaacaccg
gtacttgtagccggaactactgtgagccgtgcatcattgcacaatgaagacctgattcgt
gaaaaggacattcgaatcgatgatacggtcattgtacggaaagcgggggatattattccg
caaattgtgggggttgttctggaacagcgcccggatgacgccgtaccatataaaatgccg
acacattgtcccgcatgtgatgaagaagttgtacgcattgatactgatgtagcattgcgc
tgcgtgaatccacaatgtcctgcacaaattgcggaaggtgtgaagcatttcgtttcccgc
aatgcgatgaatatcgacggtcttggcgagaaggtagtagaacagctgctgagagaaggc
tatattcaagatgtagcaggactatatgaactgacagtagaacaactgatcaacctggag
cgaatggggcaaaaatcggcgacaaatttagttgaagcacttattcagtcaaaggacaat
tcgctggaacgactattattcggtcttggcattcgccatgttggtgaaaaagcagctaag
attttggcagcacattttgaaacaatcgatgcactaatggttgccactgaagaagatttg
aaagatattcatgaaattggcgataaaatggccgaatcgattgtcgcgtattttgcaaac
gagcaagtacaacaattaatcgaacgcctaaaaggatttggcttaaatatgagctataaa
ggcaagaaaattgtcgtggaagcaggggcaaatccttttgctggtaaaacaattgtactg
acaggcaaattacagcaattgacacgtaacgaagcaaaggcgaaaatagaacagttaggt
ggtacggttgcagggagtgtcagtaaaaaaacagaccttgtaattgtcggagaagatgca
ggctcgaagctagaaaaggcacaaagcttaggcattgaaatttgggatgaagtgcgccta
atcgaacaattaatatag
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integrated database retrieval system
