Staphylococcus simiae: SAMEA4384339_1826
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Entry
SAMEA4384339_1826 CDS
T06955
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssim
Staphylococcus simiae
Pathway
ssim03030
DNA replication
ssim03410
Base excision repair
ssim03420
Nucleotide excision repair
ssim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384339_1826 (lig)
03410 Base excision repair
SAMEA4384339_1826 (lig)
03420 Nucleotide excision repair
SAMEA4384339_1826 (lig)
03430 Mismatch repair
SAMEA4384339_1826 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssim03032
]
SAMEA4384339_1826 (lig)
03400 DNA repair and recombination proteins [BR:
ssim03400
]
SAMEA4384339_1826 (lig)
Enzymes [BR:
ssim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA4384339_1826 (lig)
DNA replication proteins [BR:
ssim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4384339_1826 (lig)
DNA repair and recombination proteins [BR:
ssim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA4384339_1826 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4384339_1826 (lig)
MMR (mismatch excision repair)
DNA ligase
SAMEA4384339_1826 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4384339_1826 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
RNA_pol_A_CTD
PTCB-BRCT
Zn_ribbon_NUD
HHH
zf-IS66
BRCT_2
DUF7575
Motif
Other DBs
NCBI-ProteinID:
SNV76179
LinkDB
All DBs
Position
1:complement(1914518..1916521)
Genome browser
AA seq
667 aa
AA seq
DB search
MAELSARVNELHKLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEQHPQYKTPDSPTV
RVGGEAQASFNKVNHDTPMLSLGNAFNEEDLRKFDQRVREHINNVEYMCELKIDGLAVSL
KYDNGYFVQGLTRGDGTTGEDITENLKTIHAIPLKIKQPLNVEVRGEAYMPRRSFLHLNE
EKEKNGEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARTQSEALDELD
KLGFKTNKERQRVKDIDGVLAYIEKWTKDRESLPYDIDGIVIKVNDLDQQDELGFTQKSP
RWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHER
DIRIGDSVIVKKAGDIIPEVVRSIPDRRPDDVVTYHMPTHCPSCGHELVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGDKIIHQLYDNHLIKDVADIFYLTQDDLLPLERM
GQKKVDNLLAAIEKAKDNSLENLLFGLGIRHLGVKASQVLAEKYETMDRLLTVTEEELIE
IHDIGDKLAQSVVTYLENDDIIALIEKLKQKDVNMTYKGIKTSDIEGSPEFSGKTIVLTG
KLQQMTRNEASKWLVSQGAKVTSSVTKNTDIVIAGEEAGSKLTKAQNLGIEIWTEQQFAD
KQNELNS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcagaattgtcagcgcgtgtgaatgaattacacaaattattaaatcaatatagttat
gaatattacgttcaagataatccttctgtacctgatagtgaatacgataaattattacac
gaattaattgatattgaagaacaacatccacaatataaaacgcctgattcaccaactgta
agagttgggggagaggcgcaagcatcatttaataaagttaatcatgatacacctatgtta
agtttaggaaatgcttttaatgaagaagatttacgtaaatttgatcaacgtgtgagagaa
catattaataatgttgaatatatgtgtgagctgaagattgatggattggcggtatcatta
aaatatgataacggttattttgtacaaggcttaacacgtggagatggtaccacaggtgaa
gatattacggaaaatttaaaaacgattcatgccatcccactaaagatcaaacagccatta
aatgttgaagttcgaggcgaagcatatatgccgagacgttcattcttacatttgaacgaa
gaaaaagaaaaaaatggcgaacagttatttgctaatccgcgaaatgctgcagctggttca
ttacgacaattagattcaaaattgacagctaaacgtaagttaagtgtttttatttatagt
gtgaatgattttacagactttaatgctagaacacaaagtgaagcattagatgaattagat
aaattaggatttaaaacaaataaagaacgtcaacgtgttaaagatattgatggtgttctt
gcttacattgaaaaatggacgaaagatagagaatctctaccttatgatattgatggtatc
gttattaaagtcaatgatttagatcaacaagatgaattaggattcactcaaaaatcacct
cgctgggcaattgcttataaatttcctgcggaggaagttgtatctaaattacttgatata
gaattaagtattggacgaacaggtgtagtaacaccaacagcaattttagaaccagttaaa
gtagctgggacaacagtctctagagcatcactccataatgaagatttgatacatgagaga
gatatccgaattggtgatagtgtcatcgttaaaaaagcaggtgacattattccagaagtt
gtcagaagtatacctgatcgtagacctgatgatgtcgtaacatatcatatgcctacacat
tgcccaagttgtggccatgaattggttagaattgaaggtgaggttgcactgcgttgtatt
aatcctaaatgtcaggcacaattagttgaaggtttgatacattttgtgtcaagacaagct
atgaatatagatggtttaggtgataaaataatacatcaattatatgataatcatcttatt
aaagatgttgcagatatcttttatttaacacaagatgacttattacctctagaacgaatg
ggtcaaaagaaagttgataatttgttagcagctattgaaaaagcaaaagataattcatta
gaaaacttattatttggtttaggtattagacatctaggtgtgaaagcaagtcaagtatta
gctgaaaaatatgaaacgatggatagattgttaactgttacagaagaagaattgatagag
attcacgatatcggcgataaattagcacaatccgtagtcacatatttagaaaatgatgat
atcattgctttaatagagaaattaaaacaaaaagacgtcaatatgacatataaaggtatt
aaaacttctgatattgaaggtagccctgagtttagtggcaaaacgattgtcttaacaggt
aaattacaacagatgacacgtaatgaagcatcaaaatggttagtgtcacaaggtgctaaa
gtaacaagtagtgttactaaaaatactgatattgttattgccggtgaagaagcgggttca
aaactgactaaagcacaaaacttaggtattgaaatttggacagagcaacaatttgctgat
aagcaaaatgaattaaatagttag
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