Streptomyces sirii: WAB15_28605
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Entry
WAB15_28605 CDS
T11107
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssir Streptomyces sirii
Pathway
ssir03030
DNA replication
ssir03410
Base excision repair
ssir03420
Nucleotide excision repair
ssir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WAB15_28605 (ligA)
03410 Base excision repair
WAB15_28605 (ligA)
03420 Nucleotide excision repair
WAB15_28605 (ligA)
03430 Mismatch repair
WAB15_28605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssir03032
]
WAB15_28605 (ligA)
03400 DNA repair and recombination proteins [BR:
ssir03400
]
WAB15_28605 (ligA)
Enzymes [BR:
ssir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WAB15_28605 (ligA)
DNA replication proteins [BR:
ssir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WAB15_28605 (ligA)
DNA repair and recombination proteins [BR:
ssir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WAB15_28605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WAB15_28605 (ligA)
MMR (mismatch excision repair)
DNA ligase
WAB15_28605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WAB15_28605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DUF3701
Motif
Other DBs
NCBI-ProteinID:
WXK79645
UniProt:
A0ABZ2QUE7
LinkDB
All DBs
Position
6327941..6330157
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAESKVPAAAREKHAQLAEQIEEHRFRYYVKDAPIVSDAEFDTLLRSLQALEDE
YPELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDDEELAAWAERLAGELGGDPKS
AGYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGDRIP
DLVEVRGEVYFPMEKFLELNERLVADGKPPFANPRNAAAGSLRQKDPKVTAGRPLHMVVH
GLGARDGLEIDRLSEAYDLLKEWGLPTATHNRVVESLAEVREFIAHYGDPETRRTAVEHE
IDGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDVRVGVGRTGRVTPYAVV
APVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGSEREFV
MPAECPECGTALQPAKEGDIDLRCPNARACPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPAEPPLKDEGDLFGLSIEQLLPIKSHVLDPDSGLPKRDPKTGEEKVVTFFANQKG
EPKKNALAMLENIQAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIDRIREADETELA
AVDGVGATIAASLKQWFADDWHQQIIEKWRAAGVRMEEEQTGEEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPDAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcggagtccaaggtgcccgcagcggcgcgggagaagcac
gcgcagctcgctgagcagatcgaggagcatcgcttccggtattacgtgaaggacgccccg
atcgtcagcgatgcggagttcgacacgctgctgcgctccctccaggccctggaggacgag
tacccggagctgcgcaccccggattccccgacccagaaggtcgccggcgcgtatgccacg
gagttcaccgaggtcgagcaccgcgagcggatgctctcgctcgacaacgccttcgacgac
gaggagttggcggcctgggccgagcgcctcgccggcgaactgggcggtgaccccaagagc
gccgggtaccacttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctac
gagcacggccggctgacccgggccgccacccggggcgacggccgtacgggcgaggacatc
acccccaacgtccggacgatcgccgagatcccgcaccgcctcaagggcgaccggatcccc
gatctggtcgaggtgcgcggcgaggtctacttcccgatggagaagttcctcgaactcaac
gagcggttggtggccgacggcaagcccccgttcgccaacccccgtaacgccgcggccggt
tcgctgcgccagaaggaccccaaggtcacggccggccggccgctgcacatggtcgtccac
ggcctcggtgcccgcgacggtctggagatcgaccgcctgtcggaggcgtacgacctgctc
aaggagtggggcctgccgacggccacccacaacagggtcgtggaatcgctggccgaggtc
cgcgagttcatcgcccactacggcgaccccgagacccgccgtacggccgtagagcacgag
atcgacggtgtggtcgtcaagctggacgagatccgcctccagggcaggctgggctccacc
tcccgggcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaag
ctggtcgacgtccgcgtcggcgtcggccgtacgggccgggtcacgccgtacgcggtggtc
gcgccggtgacggtggccggatccgaggtggagttcgcgaccctgcacaaccaggacgtg
gtcaaggccaagggcgtgctgatcggggacaccgtcgtgatccgcaaggccggcgacgtc
atccccgagatcctcgggccggtcgtcgatctgcgggacggcagcgagcgggagttcgtg
atgccggccgagtgccccgagtgcgggacggcactgcagcccgccaaggaaggcgatatc
gacctgcgctgccccaacgcccgtgcctgccccgcgcagatccgcgagcggctgttctat
ctggccggccgcaagtgcctggacatcgagaacttcggctatgtcgcggccacggcgctc
agccagccgctggagcccgcggagccgccgctgaaggacgagggcgaccttttcggcctt
tccatcgagcagctgctgcccatcaagtcccatgtcctcgaccccgactccggtctgccc
aagcgcgacccgaagaccggcgaggagaaggtcgtcacgttcttcgccaaccaaaagggc
gagccgaagaagaacgccctggccatgctggagaacatccaggccgccaagcagcgcccg
ctggcccgcatcctgaccggcctgtcgatccggcacgtgggtccggtggcggccgaggcg
ctggcgcgcgagttccgctccatcgaccgcatccgggaggcggacgagacggagctggcc
gcggtcgacggcgtcggggccacgatcgccgcctcgctgaagcagtggttcgccgatgac
tggcaccagcagatcatcgagaagtggcgggccgccggcgtccggatggaggaggagcag
acgggtgaggagggtccgcgcccgctggaaggcgtcaccgtcgtcgtaacgggcacactc
cagtcacacaccagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgacc
ggttccgtttcgaagaagaccggtttcgtagtggtgggcgacaaccccggctcgaagtac
gacaaggccatgcaattgaaggtcccggtactggacgatgacggctttgcggtgctgctg
gaacagggtcccgacgcggcacgagcggtagccgtcactccgcctgaggaggagtga
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