Sphingobacterium siyangense: JVX97_07855
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Entry
JVX97_07855 CDS
T08059
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03030
DNA replication
ssiy03410
Base excision repair
ssiy03420
Nucleotide excision repair
ssiy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JVX97_07855 (ligA)
03410 Base excision repair
JVX97_07855 (ligA)
03420 Nucleotide excision repair
JVX97_07855 (ligA)
03430 Mismatch repair
JVX97_07855 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssiy03032
]
JVX97_07855 (ligA)
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_07855 (ligA)
Enzymes [BR:
ssiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JVX97_07855 (ligA)
DNA replication proteins [BR:
ssiy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JVX97_07855 (ligA)
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JVX97_07855 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JVX97_07855 (ligA)
MMR (mismatch excision repair)
DNA ligase
JVX97_07855 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JVX97_07855 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QRY59336
LinkDB
All DBs
Position
complement(1898748..1900772)
Genome browser
AA seq
674 aa
AA seq
DB search
MLVMDIEKKIKDLTAELNHYNYQYYVLANSVISDYDFDLKLKELEALEAQYPDFADPNSP
TQRVGGDITSRFQTEKHRWPMLSLGNTYNQEELLDFDQRIRKIIGDQFEYVCELKFDGLS
ISLTYENGLLSKAVTRGDGTQGDVVTNNVKTIRSIPIKLKEGDYPDQFEIRGEIFMHKSA
FLRLNKERADNEEQTYANPRNFASGTIKLQDSAEVAKRPLDCFLYFLYCDNRTNLFHDHW
NSLNHVKDWGFHVSEHSRKCSTLTDVFAFIDYWDVERHNLGYEIDGIVIKVNDYAQQEEL
GFTAKNPRWAISYKFKAERVETTLNSISYQVGRTGAVTPVANLQPVQLAGTTVKRASLHN
ANEIARLDLHEDDTVFVEKGGEIIPKIIGVNLEKRLAGSTSFVYPTSCPECDTALIRQEG
EAVHYCPNETGCPPQIVGKMQHFIGRKMMDIEGMGDETVDTFFKKGLLRNIVDIYGLKDH
QDDLQQLERFGQKSIDNMLHGIEKSKEKPFEKVLFSLGIRHVGETIAKKLAQHFKNIDAL
AQASTEEIEGVQDIGRRIAESVKEYLDNPIHQQQIVALRNYGLNFEIEEKEIILASNSLE
GKTFLISGVFADHSREELAAVIESNGGKMLSSISAKLSYLVAGDKMGPSKLAKAEKLGIP
MINDKELFELINPK
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgatggatattgaaaaaaagataaaagacttaacggcagagctcaaccattat
aactatcaatactatgtattggcgaacagtgttatttcggactacgacttcgaccttaaa
ttaaaggaactcgaagcgctggaagctcaatatcccgactttgccgaccccaactcccct
acacagcgtgttggtggagacattacctcccgatttcaaacggaaaagcaccgctggcca
atgctttcattgggcaacacatacaatcaggaggagttactcgacttcgaccagcgaatc
cgcaaaatcatcggcgatcagttcgaatatgtttgtgaattaaaatttgacggtttatcc
atcagcttgacttatgaaaatggcctactaagtaaagccgttacgcgcggtgatggtaca
caaggcgatgttgtcacaaacaatgttaaaaccattcgttctatcccgatcaaactcaaa
gaaggagattatccagatcaattcgaaatacgaggtgaaatatttatgcacaaatcagct
tttctccgcctgaataaggaacgagccgataatgaggagcaaacctatgccaacccaaga
aatttcgcttctggaaccatcaaactccaagattctgctgaagttgcaaaacgcccattg
gactgtttcctttactttttgtactgcgacaacagaacaaatctatttcacgaccattgg
aatagcttaaaccatgtcaaagactggggatttcacgtcagcgagcatagcagaaaatgc
agcacgttaaccgatgtttttgcatttattgactactgggatgtcgaacgtcataactta
ggttatgaaattgatggaattgttattaaagtaaatgattacgcacagcaggaggaactt
ggctttactgccaaaaatccacgttgggcaatatcctataaattcaaagcagagcgtgta
gaaaccacactgaactcgatcagttatcaagttggacgtaccggcgctgttacacctgtt
gccaatcttcaacctgtacaactggcaggtacaacggtaaaacgcgcttccttacacaat
gcaaatgaaattgcacgtctcgacctacacgaagatgacactgtctttgtagaaaaaggg
ggcgaaattatacctaaaataattggggtaaatctcgagaaaagattagcaggatcaaca
agttttgtctaccccacatcttgtccggaatgcgacacagcacttatacgacaagaaggc
gaagccgtacactactgccctaatgaaactggatgcccgccacaaattgttggcaaaatg
cagcattttatcggacgaaaaatgatggacatcgagggaatgggagacgagaccgtggat
actttcttcaagaaaggtttgttacgcaatatcgttgacatctatggcctaaaagaccat
caagatgacctgcaacaactggaacgtttcggtcaaaaatcaatcgataacatgctccac
ggcatcgaaaaatccaaagaaaaaccttttgaaaaagtcttattttcgcttggaatacgt
catgtcggcgagacgattgcaaaaaaattagctcagcatttcaaaaatattgatgcactc
gcacaagcctcgacagaggaaatcgaaggagtacaagacattggacgccgtattgcggag
agtgtcaaagaatacttagacaatccaattcatcaacaacagatcgttgcattgagaaat
tatggcttaaatttcgaaattgaggaaaaggagatcatccttgcgagcaattcacttgaa
gggaaaaccttcctgatttccggtgtatttgcagaccactcacgtgaagagctagcggca
gtaattgaaagcaatggcggaaagatgttatcttccatttctgccaaattaagctacctc
gtagcgggagataaaatgggaccgtccaaactagcgaaggcagaaaaattgggcatcccg
atgattaatgataaagaactatttgaactcattaatcccaagtaa
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