Streptomyces solicathayae: R2D22_11235
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Entry
R2D22_11235 CDS
T11073
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssli Streptomyces solicathayae
Pathway
ssli03030
DNA replication
ssli03410
Base excision repair
ssli03420
Nucleotide excision repair
ssli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R2D22_11235 (ligA)
03410 Base excision repair
R2D22_11235 (ligA)
03420 Nucleotide excision repair
R2D22_11235 (ligA)
03430 Mismatch repair
R2D22_11235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssli03032
]
R2D22_11235 (ligA)
03400 DNA repair and recombination proteins [BR:
ssli03400
]
R2D22_11235 (ligA)
Enzymes [BR:
ssli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R2D22_11235 (ligA)
DNA replication proteins [BR:
ssli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R2D22_11235 (ligA)
DNA repair and recombination proteins [BR:
ssli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R2D22_11235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R2D22_11235 (ligA)
MMR (mismatch excision repair)
DNA ligase
R2D22_11235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R2D22_11235 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
WOX21935
LinkDB
All DBs
Position
complement(2512200..2514386)
Genome browser
AA seq
728 aa
AA seq
DB search
MAVEQGALPADVREQHAQLAEQVEEHRFRYYVKDQPVVSDAEFDRLLRALEALEDEYPAL
RTPDSPTQKVSGDYETGLAKVDHRERMLSLDNAFDDAELAAWAERVARDVGASGYHFLCE
LKVDGLAVNLTYEKGRLTRAATRGNGTTGEDITPNARTIQGIPDRLKGDRIPDLVEIRGE
VYFPMEKFEELNARRIAAGEQPYANPRNSASGSLRQKDPRVTATLPLRMVVHGLGARDGL
DIARLSEAYELLHEWGLPTARHNRVVDSLAGVREFIAYFGENRHSVEHEIDGVVVKLDEI
PLQGRLGSTARAPRWAIAWKYPPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVE
FATLHNQDVVKLKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPAECPECGTP
LRAMKEGDIDLRCPNARTCPAQLRERVSYLAGRECLDIENFGEVAAAALTRPLEPAEPAL
RDEGDLFDLTIEQLLPIKAYVRDQDSGLPKRDPKTGEAKVVTVFANQKGEPKKNALAMLA
NIEAAKQRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIDAATEQELAATEGVGPIIAA
AVKQWFAEDWHREILRKWREAGARTEDEGAGEDEGPRPLEGLTVVVTGTLENHTRDGAKE
ALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLEQGPEAAREA
AVPVPEAG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagggggccctgcccgccgacgtgcgggagcagcacgcacagctggcc
gagcaggtcgaggagcaccgcttccggtactacgtgaaggaccagccggtcgtcagtgac
gcggagttcgacaggctcctgcgcgccctcgaggcgctggaggacgagtacccggcgctg
cgcacgcccgactcgccgacccagaaggtctccggggactacgagacgggcctcgcgaag
gtcgaccaccgggagcggatgctctcgctcgacaacgccttcgacgacgcggagctcgcc
gcctgggcggagcgcgtcgcgcgggacgtcggcgcgtccgggtaccacttcctgtgcgag
ctgaaggtcgacggcctggcggtcaacctcacgtacgagaagggccggctgacccgggcc
gccacccggggcaacggcaccacgggcgaggacatcacgcccaacgcccggacgatccag
ggcattccggaccgactcaagggcgaccggatcccggacctcgtggagatccgcggcgag
gtctacttcccgatggagaagttcgaggagctgaacgcccgccggatcgccgccggcgag
cagccgtacgccaacccgcgcaactccgcctcgggttcgctgcgccagaaggacccccgg
gtcaccgccacgctgccgctgcgcatggtcgtgcacggcctcggtgcccgcgacggcctg
gacatcgcccggctctccgaggcgtacgagctgctccacgagtggggcctgccgaccgcc
cggcacaaccgggtggtcgactcgctggcgggcgtgcgcgagttcatcgcgtacttcggc
gagaaccggcactccgtcgagcacgagatcgacggcgtggtcgtgaagctggacgagatc
ccgctccagggtcggctgggctcgacggcgcgcgcgccgcgctgggcgatcgcctggaag
tacccgccggaggaggtcaacaccaagctggtcgacatcaaggtcggcgtcggccggacc
ggccgggtcacgccgtacgcgcaggtcgagccggtcacggtggccgggtccgaggtcgag
ttcgccaccctgcacaaccaggacgtggtgaagctcaagggcgtgctgatcggcgacacg
gtggtgctgcgcaaggcgggcgacgtgatcccggagatcctcggcccggtcgtcgacctg
cgggacggcacggagcgcgagttcgtcatgccggccgagtgtcccgagtgcggtacgccg
ctgcgggccatgaaggagggcgacatcgacctgcgctgcccgaacgcccggacctgcccg
gcccagcttcgggagcgcgtctcctacctcgccggccgcgagtgcctggacatcgagaac
ttcggcgaggtggcggcggcggcgctgacccgcccgctggagccggccgagccggcgctg
cgcgacgagggcgacctgttcgacctgacgatcgagcagctgctgccgatcaaggcgtac
gtgcgcgaccaggacagcgggctgcccaagcgggacccgaagaccggcgaggcgaaggtc
gtcacggtcttcgccaaccagaagggcgagccgaagaagaacgcgctggcgatgctggcg
aacatcgaggccgccaagcagcgtccgctcgcccgcttcctcaacggcctgtcgatccgg
cacgtgggtccggtcgcggcccaggcgctggcccgcgagttccgctccatcgaccgcatc
gacgcggccaccgagcaggagctggcggccaccgagggcgtcggcccgatcatcgcggcc
gcggtgaagcagtggttcgccgaggactggcaccgcgagatcctgcgcaagtggcgggag
gccggggcccggacggaggacgagggggccggcgaggacgagggcccgcgtccgctggag
gggctgacggtcgtcgtcaccggcaccctggagaaccacaccagggatggcgcaaaagag
gcgttgcagagccgcggagcgaaggtgaccggttccgtttcgaagaagaccgactttgtc
gttgtgggtgacaacccggggtccaaatacgacaaggcgatgcagctgaaggttccggtt
ctgaacgaggaaggcttcgcggtgctgctggaacagggtccggaggccgcccgggaggcc
gcggtcccggtgcccgaggccggctga
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integrated database retrieval system
