Shigella sonnei Ss046: SSON_2963
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Entry
SSON_2963 CDS
T00274
Symbol
ygdE
Name
(GenBank) conserved hypothetical protein
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
ssn
Shigella sonnei Ss046
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssn03009
]
SSON_2963 (ygdE)
Enzymes [BR:
ssn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
SSON_2963 (ygdE)
Ribosome biogenesis [BR:
ssn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SSON_2963 (ygdE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RLMM_N
RlmM_FDX
FtsJ
MIT_C
Motif
Other DBs
NCBI-ProteinID:
AAZ89561
ShiBASE_China:
SSO2963
UniProt:
Q3YY51
LinkDB
All DBs
Position
complement(3109919..3111019)
Genome browser
AA seq
366 aa
AA seq
DB search
MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIYECYQPDDGDKLIRELP
FSSLIFARQWFVVGELLQHLPPEDRITPIVDMLQGVVEKGGELRVEVADTNESKELLKFC
RKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYTGYSYSNNNSPFYMGIPRLKF
PAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVD
NGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRE
TIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQARQLYHDREEVTVHVRRIWAAVG
GRRDER
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggttgtattgctgtgccgtccgggctttgaaaaagagtgcgccgcagaaatt
accgataaagccggccagcgggaaattttcggttttgcccgcgtgaaagagaatgcgggt
tatgtcatttatgaatgttatcaacctgatgatggcgataagttaatccgtgagctgccg
ttcagttcattaatttttgcccgccagtggtttgtggtgggggaactcttgcagcatttg
ccgccagaagatcgtattacccccattgtcgacatgttgcagggcgtagtagagaagggc
ggtgaactgcgtgttgaagttgccgataccaacgaaagcaaagagttgctgaaattctgc
cgtaaattcaccgtgccgctacgcgctgccttgcgcgatgccggggtgctggcgaactat
gaaacgccgaagcgtccggttgtgcatgtattctttattgcaccaggctgctgctatacc
ggttactcatacagcaacaataattcgccgttctatatgggcattccgcgcctgaaattt
ccggcagaggcgccgagtcgttccacgctcaaactggaagaggcatttcatgtgtttatt
cctgcggatgagtgggatgaacgcctggcgaacgggatgtgggcggtggatttaggcgct
tgccctggcggctggacctaccaactggtgaagcgcaacatgtgggtttattccgtcgac
aacggcccgatggcgcaaagtctgatggataccgggcaggtgacgtggctgcgggaagac
ggtttcaaattccgtccgacacgcagcaatatctcctggatggtatgcgatatggttgaa
aaaccggctaaagttgcggcattgatggcgcagtggctggttaatggctggtgccgtgaa
accattttcaatctcaaactgccgatgaaaaaacgctacgaagaagtatcacacaatctg
gcgtatattcaggcacagcttgatgaacatggcataaatgctcagattcaggcgcggcag
ttgtatcacgatcgcgaagaagtgacggtgcacgtccgccgcatctgggctgcggtgggt
ggtcgtcgcgacgagcgataa
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