Streptomyces solicamelliae: ABZO31_23720
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Entry
ABZO31_23720 CDS
T11072
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssoc Streptomyces solicamelliae
Pathway
ssoc03030
DNA replication
ssoc03410
Base excision repair
ssoc03420
Nucleotide excision repair
ssoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABZO31_23720 (ligA)
03410 Base excision repair
ABZO31_23720 (ligA)
03420 Nucleotide excision repair
ABZO31_23720 (ligA)
03430 Mismatch repair
ABZO31_23720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssoc03032
]
ABZO31_23720 (ligA)
03400 DNA repair and recombination proteins [BR:
ssoc03400
]
ABZO31_23720 (ligA)
Enzymes [BR:
ssoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABZO31_23720 (ligA)
DNA replication proteins [BR:
ssoc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABZO31_23720 (ligA)
DNA repair and recombination proteins [BR:
ssoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABZO31_23720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABZO31_23720 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABZO31_23720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABZO31_23720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
XCW04635
LinkDB
All DBs
Position
5060689..5062875
Genome browser
AA seq
728 aa
AA seq
DB search
MAVEQGALPAEARERHVQLAEQVEEHRFRYYVKDQPVISDAEFDRLLRALEALEEEYPAL
RTPDSPTQKVAGDYETGLTKVDHRERMLSLDNAFDDLELAAWAERVARDVGASGYHFLCE
LKVDGLAVNLTYEKGRLTRAATRGNGTTGEDITPNARTIQGIPDRLKGDRIPDLVEIRGE
VYFPMEKFEELNARRVAAGEQPYANPRNSASGSLRQKDPRVTATLPLRMVVHGLGARDGL
HIARLSEAYELLHEWGLPTARHNKVVDSLEGVREFIRYFGENRHSVEHEIDGVVVKLDEI
PLQGRLGSTARAPRWAIAWKYPPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVE
FATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPAECPECGTP
LRAMKEGDIDLRCPNARTCPAQLRERVTYLAGREALDIENFGGVVAAALTRPLEPAEPPL
VDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGAPKIVSVFANQKGEPKKNALAMLE
HIEAAKQRPLARFLNGLSIRHVGPVAAQALAREFRSLERIEQATEEELAAVDGVGGIIAT
AVKQWFEEEWHREIVRKWRAAGVSLEDAGAGEDEGPRPLEGLTVVVTGTLENHTRDGAKE
ALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQLKVPVLDEAGFAVLLEQGADAAREA
AVPVPEEG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagggggccctgcccgccgaggcacgggagcggcacgtacagcttgcc
gagcaggtcgaggagcaccgcttccggtactacgtgaaggaccagccggtcatcagcgac
gcggagttcgacagactcctgcgcgcgctcgaggccctggaggaggaatacccggcgctg
cgcacgccggactcgccgacgcagaaggtcgcgggggactacgagaccggtctgacgaag
gtcgaccaccgcgagcgcatgctctcgctcgacaacgccttcgacgacctggagctggcc
gcctgggcggagcgcgtggcccgtgacgtcggcgcgtccgggtaccacttcctgtgcgag
ctgaaggtcgacggcctcgcggtcaacctcacgtacgagaagggccggctgacccgggcc
gccacccggggcaacggcaccacgggcgaggacatcacgcccaacgcccggacgatccag
ggcattccggaccgtctgaagggcgaccggatcccggacctcgtggagatccgcggcgag
gtctacttcccgatggagaagttcgaggagctcaacgcccgccgggtcgccgccggtgag
cagccgtacgccaacccgcgcaactccgcctcgggttcgctgcgccagaaggacccccgg
gtcaccgccacgctgccgctgcgcatggtggtgcacggtctcggagcccgcgacggcctg
cacatcgcccggctctccgaggcgtacgaactgctccacgagtggggcctgccgaccgcc
cggcacaacaaggtcgtggactccctggagggcgtgcgtgagttcatccggtacttcggg
gagaaccgtcactccgtcgagcacgagatcgacggcgtggtcgtgaagctggacgagatc
ccgctccagggccggctgggctccacggcgcgcgcgccacgctgggcgatcgcctggaag
tacccgccggaggaggtcaacaccaagctcgtcgacatcaaggtcggcgtcggccggacc
gggcgcgtcaccccgtacgcgcaggtcgagccggtcaccgtggccgggtccgaggtcgag
ttcgccaccctgcacaaccaggacgtggtgaaggccaagggcgtgctcatcggcgacacc
gtggtgctgcgcaaggccggcgacgtgatcccggagatcctcggcccggtggtggacctg
cgggacggcacggagcgggagttcgtgatgccggccgagtgcccggagtgcggcacgccg
ctgcgggccatgaaggagggcgacatcgatctgcgctgccccaacgcgcggacgtgcccg
gcgcagctgcgggagcgggtcacctacctcgccgggcgcgaggccctggacatcgagaac
ttcggcggggtggtggcggcggcgctcacccgcccgctggagccggccgagccgccgctc
gtcgacgagggcgacctgttcgacctgacgatcgagcagctgctgcccatcaaggcgtac
gtgctcgaccaggacagcggactgcccaagcgggacccgaagaccggtgcgccgaagatc
gtctcggtcttcgccaaccagaagggcgagccgaagaagaacgcgctggccatgctggag
cacatcgaggccgccaagcagcgcccgctggcccgcttcctcaacggcctgtcgatccgc
cacgtcggccccgtcgccgcccaggcgctggcccgcgagttccgctccctggagcgcatc
gagcaggccaccgaggaggagctggcggcggtcgacggcgtcggcggcatcatcgccacc
gcggtgaagcagtggttcgaggaggagtggcaccgcgagatcgtgcgcaagtggcgtgcc
gccggtgtgagcctcgaggacgcgggcgccggcgaggacgagggcccgaggccgctcgag
ggactgaccgtcgtggtcaccggcaccctggagaaccacaccagggatggcgcaaaagaa
gcgctgcagagccgaggtgcgaaggtgaccggttccgtttcgaagaagaccgacttcgtg
gtcgtcggcgacaacccgggatccaagtacgacaaggcgatgcagctgaaggttccggtt
ctggacgaggcaggcttcgcggtgctgctggaacagggcgcggacgccgctcgcgaggcc
gcggtgccggtacccgaggagggctga
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