Streptomyces solicamelliae: ABZO31_31450
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Entry
ABZO31_31450 CDS
T11072
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssoc Streptomyces solicamelliae
Pathway
ssoc03030
DNA replication
ssoc03410
Base excision repair
ssoc03420
Nucleotide excision repair
ssoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABZO31_31450 (ligA)
03410 Base excision repair
ABZO31_31450 (ligA)
03420 Nucleotide excision repair
ABZO31_31450 (ligA)
03430 Mismatch repair
ABZO31_31450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssoc03032
]
ABZO31_31450 (ligA)
03400 DNA repair and recombination proteins [BR:
ssoc03400
]
ABZO31_31450 (ligA)
Enzymes [BR:
ssoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABZO31_31450 (ligA)
DNA replication proteins [BR:
ssoc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABZO31_31450 (ligA)
DNA repair and recombination proteins [BR:
ssoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABZO31_31450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABZO31_31450 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABZO31_31450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABZO31_31450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XCW06860
LinkDB
All DBs
Position
complement(6816486..6818531)
Genome browser
AA seq
681 aa
AA seq
DB search
MTFMTENSALLSPAAYVEAVTTAVAASAAYYGDGTTPLGDDEYDGLLRAIAAYEEAHPDE
VLAESPTGKVAGGAVQGDVPHSVPMLSLDNVFDADELAEWAAGLERRLGRPVAGWCVEPK
LDGLAVAARYRGGRLVQILTRGDGLAGEDITHAADAVLGLPPVLTRPIDIELRGEVLLTT
AQFEEANRIRLAHEATPFAHPRSGAAGTLRAKDRPYRIELTFFAYGAIGLDDLGHAALLE
DLAVLGANTAASTAAAPMRCETVEQVQERIEVIAGLRADLPFGIDGVVVKADDVEDQRQA
GNGSRAPRWAVARKLAAEHKVTRLLAVEWNVGRTGIIAPRAVLEPVVIDGVTVTYATLHN
PSDITRRGLMIGDQVFVYRAGDVIPRVEAPLTDQRTGAESPIVFPETCPRCDDAIDTSEQ
RWRCVRGRSCQAVASVIYAAGRDQLDIEGLGGTRAIQLVEAGLVKDIADLFTLTREQLLG
LERMGETSATNLLAAIETARGAALSRVFCALGVRGTGRTMSRRIAAHFGSMAAVRAADAD
TLAGVDGIGAEKARVIAAELVELAPLLDKLQAQRVGTQVTEPQRPTADGDEAAEDSAGGP
LAGQAVVVTGSMTGALAALSRNAMNELIERAGGKASSSVSKRTTLLVAGEKAGSKRTKAE
ELGIRILGPEEFAALVADLLP
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcatgaccgaaaacagtgctctgctctcccctgctgcgtacgtggaggcggtg
accaccgccgtggcggcgtcggccgcgtactacggcgacgggaccacgccgctcggtgac
gacgaatacgacgggctgctgcgcgcgatcgcggcctacgaggaggcccacccggacgag
gtgctcgccgagtcgccgaccgggaaggtggccggtggcgccgtgcagggtgacgtgccg
cactcggtgccgatgctctccctcgacaacgtcttcgacgccgacgaactcgccgagtgg
gccgccgggctggagcggcgtctgggacgccctgtggccgggtggtgtgtggagccgaag
ctcgacggcctcgcggtggccgcccggtaccggggtggtcggctcgttcagatcctcacc
cgcggcgacggcctggccggcgaggacatcacccacgctgccgacgccgtcctcggtctg
cccccggtactcaccaggccgatcgacatcgaactgcgcggcgaggtgctgctgacgacc
gcgcagttcgaggaggccaaccggatccggctcgcccacgaggccacgcccttcgcgcac
ccgcgcagcggagcggccggcacgctgcgtgccaaggaccgcccctaccggatcgagttg
accttcttcgcctacggcgcgatcggcctggacgacctcggccacgccgctctgctggag
gacctggccgtgctcggcgcgaacacggccgccagtacggccgccgccccgatgcgatgc
gagaccgtggagcaggtgcaggagcgcatcgaggtgatcgccggactgcgcgcagacctg
ccgttcgggatcgacggtgtcgtcgtcaaggccgacgacgtcgaggaccagcggcaggca
ggcaacggctcgcgcgccccgaggtgggcggtggcccggaaactggcggccgagcacaag
gtgacgcgcctgctggcggtggagtggaacgtcggccggaccgggatcatcgccccgcgc
gctgttctggagcccgtggtcatcgacggggtgacggtcacgtacgccacgcttcacaat
ccgtccgacatcacccgtcgcgggctcatgatcggcgaccaggtgttcgtgtaccgggcc
ggcgacgtgatcccccgggtcgaggcgccgctgaccgaccagcgcaccggcgcggagagc
ccgatcgtcttccccgagacgtgcccccgctgtgacgacgcgatcgacacctccgaacag
cggtggcggtgcgtgcgcggccgcagctgtcaggccgtggcctcggtgatctacgcggcc
ggccgggaccagctcgacatcgaaggtctcggcggcacgcgcgcgatccagctggtggaa
gcaggtctggtcaaggacatcgccgacctgttcaccctgacccgcgagcagctcctcggt
ctggagcggatgggcgagaccagcgccaccaacctcctggccgcgatcgagaccgcccgc
ggggccgcgttgagccgcgtgttctgcgccctcggcgtccggggcaccgggcgcacgatg
tcccggcggatcgccgcgcacttcgggtcgatggccgcggtccgggccgccgacgcggac
acactggccggggtcgacggcatcggtgccgagaaggcccgcgtcatcgcggccgaactc
gtcgaactcgccccgctcctcgacaagctccaggcccagcgggtcggcacccaggtcacc
gagccgcagaggcccacggccgacggagacgaggcggccgaggactcggcgggaggcccg
ctggcgggacaggccgtcgtggtgaccggctccatgaccggcgccctcgcggcgctgtcc
cggaacgcgatgaacgagctgatcgagcgggccggcggaaaggcctcgtcgtcggtgtcc
aagcggaccaccctcctggtcgcgggcgagaaggccggctccaagcgcaccaaggccgaa
gagctcggcatccgcatcctcggccccgaggagttcgccgcgctcgtcgccgacctgctc
ccctag
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integrated database retrieval system
