Solea solea (common sole): 131455629
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Entry
131455629 CDS
T10853
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
131455629 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssoe03400
]
131455629 (lig4)
Enzymes [BR:
ssoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
131455629 (lig4)
DNA repair and recombination proteins [BR:
ssoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
131455629 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
131455629
NCBI-ProteinID:
XP_058479376
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Position
2:complement(4589496..4594814)
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AA seq
911 aa
AA seq
DB search
MEGSSGSDAAGEPSVAEQVPFLHLCTVLEKIQKSKLRPEKSKILRDFIDSWRKFHSALHK
DKAKTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLSNYRAP
TTSQGEAGDFASMAYFVLKKRLTSQGNLSIKEVNDFLDSVAANNAGKQKDLVKKSLLHLI
TRSSPLEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHDPSVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTDNFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNNQKLGKETLKKRNETLQTIFNPVKGRLHLVPKTDARTMQEVV
NALNDAIDDREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLGAVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
TSILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDVYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLYITDEEPQKKKRKLVARPKKVVGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTDDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLILAN
QHDMVWASWLLECLDQKEVVPWQPRHMIHMSPSTKEHFGKEYDAYGDSYFVDTDVQQLRE
LFGRIRGGDNAPAAVDIGQVEQRYGWDNLPTSMFRPFRAYMDSCADVGDPDTAIPATCLD
IRALEFRYHGGTVVPKLEEGVSHVIVTEETRLVDLRTLRRRFRRKFKIVRDSWVTDSIKA
GHLINDDSYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcttctggaagtgatgctgctggtgagccatctgttgcagaacaggttcca
tttcttcacctgtgtaccgttctagagaagatccagaagtctaagctgcgtccggaaaaa
tccaagatcctcagggatttcattgattcgtggaggaagtttcattctgccctccacaaa
gacaaggccaaaacaacggactctttctacccagctatgcgtctcatagttccttcattt
gaacgagagcgaatggcatacggcatcaaagagagtatgttagcaaaactctacatcgat
gtattaggcctaccaaagaatggtccagaggccaataaactgtcgaactacagagcccca
actacatcccaaggagaagctggagactttgctagcatggcctactttgtcctcaagaaa
cggctcaccagccaaggaaacctcagcatcaaagaagtcaatgacttcctagattcagtg
gctgccaacaatgctggtaagcagaaggatcttgttaaaaaaagtcttcttcacctcatc
acccggagctcacctcttgagcaaaagtggctcatcagaatgattctgaaggacatgaag
cttggcgtcagcaaagaaactgttctccaggtcttccacccggacgctgccgagctctac
aacgtcaacacagacttgaacaaagtgtgccagcagctccatgacccttctgtgtcattg
agcgaagtctccattggacttttctctgcctttaagcccatgttggcagctgtggctaac
attcgcaatgtggagaaacagatgggcaacagccctttttacatccagaccaagcttgat
ggggagcgcattcagcttcacaaagatggggatgtgtacaaatactttagccgaaatgct
tttgaatacacacagcagtttggaggatcccctctagaaggctcactcacgccttatatc
cataatgtttttaaaagccatgtggtgaactgcatccttgacggtgagatgatggcgtac
aacccaaccacagataacttcatgcagaaagggagcaagttcgatattaagaggctgatg
gaagactctgagctacagacgtgcttctgtgtgtttgatgtcttgttagtcaacaaccag
aagcttgggaaggaaacactgaaaaagcgcaacgagacccttcagacgattttcaaccca
gttaagggaaggttacacctggtgccaaagacagacgcaaggaccatgcaggaggtggtg
aacgctctcaatgatgctattgatgacagagaagagggcatcatggtgaaggatcctttg
tctatctacaaacctgataagcgcggggaaggatggctgaaaataaagccagaatatgtt
gatggcttgatggatgagcttgacctgctgattgttggtggttattggggcaaagggaga
cgaggtggtatgatgtcccatttcttaggtgccgttgctgaagctccgaagcctggagag
aaaccttcggtcttccactcgttctgccgcattggctccggctacaccatgaaggagttg
tatgaccttggtttaaagttagccaagcattggaaagtgtatagaaaaaacgacccacca
acatccatcctgtgtggaacagagaaacccgaagtctacatcgagccctgcaactctgtc
atcatccaagtgaaggcagcagagatagttggaagcgacgtgtacaaaacaaactgcacc
ctgcggttccccaggatcgagaagattcgtgacgacaaggagtggcaccagtgcatgact
ttggcagagctggatcagttccgcagcaaggcgtcggggaaactcgcctcgaggcacctt
tacatcaccgacgaggaaccacagaagaagaagcgcaagctggttgccagacccaagaag
gtggttgggatcatcgaccactttaagccgcaggacctctctggggttaccaaggagacg
gacatgtttgaagatgtggagttctgcatcctgaacggtactgacgatcatcccaaagct
gagctggagaagggggtggccaggtgtggaggaatcgtggttcaaaacccaggacgagac
acctactgtgtgattgctggtgtggagaacatgcgtgttaagaacctgattttagccaac
caacatgacatggtctgggcctcgtggctgctggagtgtctggaccagaaggaagtggtg
ccatggcaaccacgacacatgatccacatgtcaccctccaccaaggagcactttggaaag
gagtacgacgcctatggtgacagctacttcgtggacacagacgtgcagcagctgcgagag
ttgtttggccgcattcgtggcggtgacaacgcgccggcggccgtggacataggacaggtg
gagcagcgttacggctgggataacctacccaccagcatgttcagacccttcagggcctac
atggacagctgcgctgatgtaggagaccccgacaccgccatacctgccacttgtttggac
atcagggcgctggagtttcgctaccacgggggcacagttgtgccgaagctggaggaagga
gtgtctcatgtcatcgtcacagaggaaacgagacttgtggatctgaggactctgagacga
cgttttaggagaaagtttaagattgtaagagattcgtgggtgactgactcaatcaaagca
gggcatctcattaatgatgacagttacctggtttga
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