Solea solea (common sole): 131458293
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Entry
131458293 CDS
T10853
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1-like isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04530
Tight junction
ssoe04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
131458293
09142 Cell motility
04810 Regulation of actin cytoskeleton
131458293
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssoe04990
]
131458293
Domain-containing proteins not elsewhere classified [BR:
ssoe04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
131458293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
RNA_pol_Rpc82
Motif
Other DBs
NCBI-GeneID:
131458293
NCBI-ProteinID:
XP_058483251
LinkDB
All DBs
Position
4:complement(4958903..5012276)
Genome browser
AA seq
1671 aa
AA seq
DB search
MGNVESQNGDSGFYGDVAGQLSRKHTSRSLRLSNKHPITRRSRHSSSVKQEHRNSQTSTR
SSSTPSIPQSLVENGLETFNATDAFGEFGINPHWTQRVAMTMRPESFQQDDDPLATPTPE
TSEADTIAQDGGEDSMGEGDAGGEERYLQRMTEGPREGGSFKKKRSKSADMWREDSLEFS
LSDLSQEHLTSTEEIVDGGEEEEEEERFTRPGAGSAERASSLDHLCSQQSPGLRGQRSRY
PKNRKEADRDGDGHGEEGLMSPSEEDVGGYGAFTLPCRRSHCLSEGLAGLGIPAVPCPAF
QGRRAQTTQDISGILGEGSEYGDSGIDGVAAELDGELVSRRCKAMSASYSVYSTAESSVF
NGSDSGSSSAGGGEGRGGEGGRGGVYENFRKELDNQAWTRGRDCTEEAGSAVSDEQSSGT
LSSAYPSDALTGCAQGTVRKAGALAVKNFLVHKKNKKVETATRRKWKHYWVSLKGCTLFL
YDSDSRSGIDHNSVPKHALWVENSIVQAVPEHPKKDFVFCLSNSVGDAFLFQTSGQTELE
NWITAIHSACAAALARQHHREDTVRLLRTEIRKLEQKIDMDEKMKKMGDMQLSTVTDGKK
RKTILEQIFLWEQNLEQFHMDLFRCRCYLASLQGSEPPNPKRLLGFASRPTKLAMGRLGI
FSVSSFHALVSARTENNIRRRNQAAARTFSKRRSRFSSLWGLDTASKRKSKGHPSINQVF
VDGTESAKKPLERMFEDAVSEKSKERGEGSVKSPPLQNVDSFVWVPDYLTPSWVCLPNNQ
PVLAVIQPGDTALEVLSSICKTHKIDRSGHYLRLKVWVDNQTLYFVPQLEDDVSDVVYKE
IEICPKMTQMIRFDNAESCTIGYGFSVAVIDEDGTQQLHITEVKAGGLASAKGLRAGDEI
LLLNGKAASTLQMDDMRAAFASQALTLCVSALPRQDPQVLCSLPPRRSDGEQDRSTDIYS
QSQEDILDEVSGLTVESLDESMDDRAALTLQSPDDQEDKTLAGTGQKSTEQVTAICRSLH
DMNPPECPMSCSSSSSSSSLSPSPVSAFPPANGTAAQRQLSHADKLRKVINELVETEKTY
VKDLNCLIECYLTPLQKESFLTQDELDVLFGNLGEMVEFQVEFLRTLEDGIRLVPDLDRL
ERVEQFKKVLFSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAKTDPDFKAFLAERNPR
QQHSSTLESYLIKPIQRVLKYPLLLRELYSLTDPDSEEHYHLDVAMKAMNKVASHINEMQ
KLHEEYGAVFDQLINEQTADKKEVADLSMGDLLLHSAVVWLNPPASLFKSKKDPDLAAFV
FKTAVVFVYKGCSKHRRKIGGSHRASVSDDRDPFRFRHMIATDSLQVRALANSEGTAVCE
IVHTRSESEGRPERTFQLCCTSPESKKDFLKAVHSILREKQRRQLLKTESLPPNQQYVPF
GGKRLCALKGARPAMNRAASAPSRTLARRKLVRNRFTIDTDLVFHGNNNNNGSDSDAAHP
PSCPPLFQHALLQSRKPQGEDTDRWVEEQFDLGSYESQGEGIDVGQVKETDILSDDDEYC
KSVRAASAEPGDLEGKMGGLNLQGGETRSHNLNGQLLETRSEIIRGLTQDGGGSGLDSLP
SCGISLSCCTTQTLKLAPLKQCAAEEAANSDHDVVWVRRDDFANGCNSDVF
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgtggagagtcagaacggggacagtggtttctacggcgacgtggcgggacag
ctctcccgcaagcacacgtcccgctcgctccgtctctccaacaagcacccgatcacccgc
cgctcccggcactcctcctccgtgaagcaggaacacaggaactctcaaacctccactcgc
tcgtccagcacgccgagcatcccgcagtcgctcgtggagaacggactggagactttcaac
gccacggatgctttcggagagttcggcatcaaccctcactggacacagcgcgtggccatg
acaatgaggccagagtcctttcagcaggacgacgaccctttggccacgccgacccctgaa
acctcggaggcggacacgatagctcaggacggtggagaggactccatgggggagggagac
gctggtggggaggagcggtacctgcagcgaatgactgagggccccagagagggagggagt
ttcaaaaagaagcggtccaagtcggcggacatgtggagagaagacagcctggagttttct
ctgtccgacctgagccaggagcatctcaccagcacggaggagatcgttgatggaggagaa
gaagaggaggaggaggagcgcttcactcggcccggagcaggttcagctgaaagagcatcg
tccctggaccatctgtgcagccagcagagtcccggcctcaggggccagaggagccgctac
cctaaaaacaggaaagaagccgaccgcgacggcgatggacacggggaggaggggctgatg
tctccctccgaggaggatgtcggaggctacggagcgttcacacttccctgccgacgatcc
cactgcctctctgagggcctggcggggctcggcatcccggccgtgccctgccctgctttc
caaggacgccgtgcacagacgactcaggatatctccggcattctgggcgaaggcagcgag
tacggcgacagtggcatcgacggcgtcgccgcagagctcgacggggagctggtgtcgcgc
cgctgcaaggccatgtcggcctcgtactccgtgtactcgacggcggagagcagcgtgttc
aacggcagcgacagcgggagcagcagcgcaggaggaggagagggacgaggtggggaagga
ggaagaggaggagtgtacgagaacttcaggaaggagttggacaatcaagcctggacgcgg
ggccgggactgtacggaggaggccggctcggctgtgagcgacgagcagagcagcggcacg
ctcagcagtgcgtatccatcggacgctctgactggctgtgcacaaggcacagtgaggaaa
gctggagctctggctgtgaagaacttcctggtccataaaaagaacaagaaggtggaaacg
gcaacgaggcgcaaatggaaacactactgggtctctctgaaaggctgcacccttttcctg
tatgactcagatagtcgctcgggcatcgaccacaacagcgttccgaaacacgcgctgtgg
gtggagaacagcatcgtgcaggccgtacctgagcaccccaagaaagatttcgtcttctgc
ctcagcaactcggtcggggacgccttcctcttccagacgtcgggccagacagagctggag
aattggatcacggccatccactccgcgtgcgccgctgctctcgctcggcagcaccaccgc
gaggacacggtgcgcctgctccggaccgagatccgcaagctggagcagaagatcgacatg
gacgagaagatgaagaagatgggagacatgcagctgtccaccgtcaccgacggcaagaag
aggaagaccatactggagcagatcttcttgtgggagcagaacttggagcagtttcacatg
gacctgttccgctgccgctgctacctggccagtctgcagggcagcgagccgcccaacccc
aaacgcctgctgggttttgcgtcgcgtcccacaaagctggccatggggcgactgggcatc
ttctccgtttcgtccttccacgcactggtgtcggcacgcacagagaacaacatcaggagg
agaaatcaggccgcggctcggaccttcagtaaacgccggagccgtttctcttccctctgg
ggtctggacactgcgtcgaagaggaagagcaaggggcatccctccattaaccaggtgttt
gtcgatgggacagagtccgcgaagaagcccctggagcgcatgtttgaagacgccgtcagt
gagaaatctaaggagagaggagagggatctgtgaaaagccctcccctgcagaacgtggac
agcttcgtttgggtccccgattacctgactccctcctgggtgtgtttgccaaacaatcag
cccgtcctggccgtcatacagcctggggacacggcgctggaagtcctcagctccatctgc
aagacccacaaaatagaccgatccggccactacctgcgtctgaaagtgtgggttgacaac
cagacgctctactttgttccccaacttgaagatgacgtctctgatgtggtctataaagaa
atcgagatttgccccaaaatgacccagatgatccggtttgacaacgccgagtcctgcacc
atcggatacggtttttccgtggctgtcatagacgaagatgggacgcagcagcttcatatt
accgaagtgaaagcagggggactggcctcagcgaaaggtttgcgagcgggggacgagatc
ctgctgctgaacggcaaagccgcgtcgacgctccaaatggacgacatgagggccgcgttc
gcgagccaggcgctgaccctgtgtgtcagcgccctgccccggcaagacccccaggtgctg
tgttcccttccgcctcgacgctcagacggggagcaggaccgcagcacggacatctactcc
cagagccaagaggacatcctggacgaggtgtcggggttgacggtggagagtctcgacgag
agcatggacgaccgagctgcgctgacactgcagagccccgacgatcaggaagacaaaacc
ctcgcagggacgggacagaagagcacggagcaggtcaccgctatctgccgcagcctccat
gacatgaaccccccggagtgccccatgtcgtgctcctcgtcgtcgtcctcgtcctccctg
tcgccgagccccgtgtcggccttcccgcccgccaacgggaccgccgcgcagcggcagctc
tcccacgcggacaaactgcgcaaggtcatcaacgagttggtggagacggagaagacttac
gtcaaagacctgaactgcctgatagagtgctacttgacacctttgcagaaggagagcttc
ctcacacaggatgagttggacgttttgttcggtaacctcggggagatggtggagttccag
gtggagttcctccgaacgctggaagacggaatccgactggtgccagatctcgacaggctg
gagagggtggagcagtttaagaaagtgctgttctctttgggcggctcgttcctctattac
gctgatcgcttcaagatctacagcgccttctgtgccagccacaccaaggttccaaaggtc
ctggctaaagcaaagacagatccagatttcaaggctttcctcgccgagagaaacccccga
cagcagcactcgtccactttagagtcttacctcatcaaacccatccagagggtcctgaag
tacccgctgctgctgagggagctctactcgctcactgacccggacagtgaggaacattac
cacctggacgtggcgatgaaggccatgaacaaggttgccagtcacatcaacgagatgcag
aagctgcacgaggagtacggcgccgtgttcgaccagctcatcaacgaacagactgcggac
aaaaaagaggtggctgacctgtcgatgggggaccttctgctccactccgctgtggtttgg
ctcaaccctcctgcgtctttgttcaagagcaagaaggaccctgacttggcagcatttgtg
ttcaaaaccgcagttgtgtttgtctacaaaggctgctccaagcacaggagaaagattggc
ggatctcaccgcgcgtccgtgagtgatgacagggatcccttccgttttcgccacatgatc
gccacggactctctgcaagtccgcgccctcgcaaactccgagggaacagccgtgtgtgag
atagttcacacgagatctgaatccgagggacgaccagagagaaccttccagctgtgctgc
acttctccagaaagtaagaaggacttcctgaaagcggtgcactccatcctgagagaaaag
cagcgacggcagcttctcaaaaccgagtctctgccaccgaaccagcagtacgtcccattc
gggggcaaacgcttgtgtgccctcaaaggggcgcgacccgccatgaacagagcagcttcg
gctccatcccgaacgctggcccgcaggaagctggtgcggaaccgcttcaccatcgatacc
gacctggtcttccacggcaacaacaacaacaacggcagcgactccgacgccgctcacccg
ccgtcctgcccgccgctcttccagcacgccctcctccagtcccgcaaacctcagggcgag
gacacggaccgctgggtggaggagcagttcgacctggggtcctacgaaagccagggggag
ggcatcgacgtggggcaggtgaaggagacggacattttaagcgacgacgacgagtactgc
aagtcggtgcgggcggcgtcggcagagccgggcgacctggagggaaagatgggcgggctc
aatctacagggcggagagacgaggagtcacaacctgaacggacaattattagagacaaga
agtgagatcatacggggcctcacgcaggatggtggcggctcaggtttagactctttgccc
tcctgtggcatttctttgtcctgctgcacgacacagactctgaagctcgcccccttgaag
cagtgcgccgcggaggaggcggcaaacagcgaccatgacgtcgtctgggtgcggcgggac
gactttgcaaacgggtgcaacagtgacgtcttctga
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integrated database retrieval system
