Solea solea (common sole): 131460785
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Entry
131460785 CDS
T10853
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ssoe Solea solea (common sole)
Brite
Chromosome and associated proteins [BR:
ssoe03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
131460785 (smchd1)
DNA repair and recombination proteins [BR:
ssoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
131460785 (smchd1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131460785
NCBI-ProteinID:
XP_058487554
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Position
1:35435827..35454697
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AA seq
1949 aa
AA seq
DB search
MSNPGAQRLLSRRRIHVHDFRSNSVSKKQFETSGLDYNDFLRGLRKIFSIHQHEIFVLVT
TDRTVLDFDKFAELQDGITLYLLHNENQPLPAAVEEHIKFTPHFETLIQSGIHEYYASEG
KKPLPYALAELIDNALSATAKNTGIRSIEIRMLFDESLGKPAVVVLDNGRGMTSKQLKNW
AVYRLSKFTRAKSTLANQQEEYLRPDPVPRSLNSDISYFGVGGKQAVFYIGDSVRMISKP
ARSPDVHELVLSKEEFERKEKNKEDVYGGIIKNRKPGDSSHVVNSNDRSIRTVIAEECGK
ESFTAVVITGIPPEHLTYLKGSFQQWTRDLAHTYHYYIHGASGNDMNTNLDNLSKIDIQV
NMQEKPPKFPRAVNLREIDNDMQTLYINAAADTFEFKATTPDGGRVEGLIRYHPFLYDRE
TYPKDPYTVQEEDDENEVEIRYQTRVKRQIFECFWNGRLIPYTTVSEFDWCSWTRGSKVP
EECYGRFSGVLFANDKFQVSTNKLTFIDLEQKVKSADTILTRVLNGQEQRNVERQFLQWL
QYCHEKWDKQVKFLGFSGIITRNDVPTKKMQHPWAKFTAIELDGRTYKRGKRVKSQKTQP
IMHGTIIQFLLYGDHDKDVFATGGQVEISLEPKALYNRTKIIPISKIDRTATDEGIEKTI
ENDLNKLPELLQVDWPDGNPWPQNGVRPAGTPLGALTVKILNKKGDSMSRMPLVDQKTVI
KLSIKLTLVQHVGAGNDEEIVSLAAQHSAKWGFGFRKIEKLTNPGSYTLYLTTIINETSD
TVFGGRELPSYKLHFKITEGSAEAFVMDGVSSTLHVGVPFDIPLQLKDAYGNSAMPPSGL
KPLLACSDLALSYETVDSCGKKLIIRGVKAKGKVLNYQQSQTYDLKVTLPGLKKDTQTTK
ISLLPGNPHTLHVKGEGNFFILENGNPARFDVEIHDEAGNITAHSKQTVRCKVDGLPPAA
IDCSRTGAGQLVTKPIELKFTTGEPHMLRVVFEILNSKTVAKVLVQLKVIPSKRVVLIKL
WSSQGDENLELKDKEKIEWLAGGSLEKLVYKLYDEAGRQVLLTDEIASKIKVNWTRTLNL
KDVAQGKLPVVQVSKQVQDEQFCLVSYQEESVSVSFTIVPHPDDPESLKATELQNPVKLG
ETVSENLNLELVDQYKNPTKTLTPACVNHMTVEAEGLDKSDVTFKWQESSRSIQVEGIRF
QTGTPGIREMRFKYSSYMANVIIKVTAGDPSQLKLVSGPKEPLQVVNDHSIPTPFVVQLF
DKWGNTSSDKRVVVELRSSLPALKVTTPVTSQPVNSEGKVSFTVDSVSGPKGSYQLDFRG
SFNNKPIPGPSVDLTVLPDPNKPVKLLVEYDTAAKIRAGGTFPVFLVTVMSDEGIPMTTF
NPAAVSMFLWEGEPSEHHNATELKCSVPMKNDRTNCFHFRDKVIPTRTGKCTIQFSLHVG
QTENLHSDQIPINVVANQPVRLGPTVQPPAPVVSCSTDVASRTLVNNLTLRIMDSYENPA
GQDLQGRVVVSIASDDSSKSTPLFDGKLNRYHMNMVKGEVHIRRLSIMENSPGENGSQYT
LLFNPEVPAIPTPLAPFKLTFHFYVDAVNQQKMSGLLKKKEDLSLAVEKLKEVFDDYKGL
LEMLRKQYLTAVNKAVVIRDQLIQKNVGMPESPSIAAIDTLLMEKTNESEALLQGQNRVC
SVQDSFSGQQDVLGKIGHLAHVQDDAAARVISWHIRGDMDCVVTRTLEAAERIHKDTGGR
QQVMALESMFRPQVSRTLPHIRNGRMLFNSVGNPVHAREHLIFLQDKESCDIVFKNILRD
TILIDDLHSGNNYRRSVVRTGIQCPTILTRQGDRISSMGKFGGLQNKAPSTNSFPVFGAP
HPPQYYILQEQKELLSQYRAAVEKSKVAENDHNDYLKIMNSSDTKKKEEDMVKMKKQLAE
IERHLDSTPGRPAKRGAGEAHGIDRKRAK
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatccgggcgcgcagcgtctcctctcccggaggaggatccatgttcacgacttt
cgctcaaattcggtttccaaaaaacagtttgaaaccagcggcttggactataacgacttt
ctcagaggtctgcggaagatattttcaatccatcaacatgagatatttgtgctggtcaca
acagacagaacagtcctggattttgacaagtttgcagagcttcaggatggtattaccctt
tacttgctgcacaatgagaaccaacctttgccggcggcagtggaggagcatatcaaattt
acgccacattttgaaacgttgatccagagtggcattcatgagtactacgctagcgagggc
aagaaacctttaccctatgcacttgctgagctcatcgacaacgctttgtcagccaccgct
aaaaacacaggaataaggagcatagaaataagaatgctttttgatgaaagtcttgggaaa
cctgccgtcgttgtcctggataacggacgtgggatgacttctaagcagctcaaaaattgg
gccgtgtacagactctctaaatttacccgagcaaagagcacacttgcaaatcagcaagag
gagtatcttcgtcctgatcctgtccctcgaagtctcaacagtgatatatcctactttgga
gttggaggaaaacaagctgttttctacattggtgactcagtcaggatgataagtaaacca
gcacgctccccagatgttcacgaattggttttgtcaaaggaagaatttgagagaaaagaa
aagaacaaagaggatgtttacggagggatcatcaagaacaggaagcctggtgactcctcg
catgtggttaatagcaatgaccgttccatccgcacagtgatcgctgaggagtgtgggaag
gaaagctttacagccgtagtgatcacgggaatcccacctgaacatttgacctatttgaaa
ggcagtttccaacagtggaccagagatctagctcacacatatcactactacatccacgga
gccagtggaaatgatatgaataccaacctggataatctctcaaaaattgatattcaggtc
aacatgcaggaaaagcctcccaaatttcctcgtgctgtaaatctcagggaaattgacaat
gacatgcagactctgtacataaatgctgctgcagacacatttgagttcaaagccaccact
ccagatggtggcagagtggagggacttattcggtatcatcccttcctttatgacagggag
acttaccctaaagacccatacaccgtgcaagaggaagatgatgaaaacgaggtcgaaatc
cgatatcagacgagagtaaagaggcaaatctttgagtgtttctggaatggacggctcata
ccttacaccacagtctctgagtttgactggtgttcctggacaagaggatcaaaggtgcct
gaagagtgttacggtcggttttcgggggtactgtttgctaacgacaaattccaggtcagc
acaaacaagctcaccttcattgacctggagcagaaagtgaagagcgcggacacgatccta
acacgtgttttgaatggacaggaacaaagaaacgttgagaggcagtttctgcagtggtta
cagtactgtcacgagaagtgggacaagcaagtgaagttcctgggcttctcgggaatcatc
acgcgaaatgatgtgcccactaagaaaatgcagcatccctgggcaaagttcactgccatt
gaattggatggaagaacatacaaacgtggcaaacgtgtgaagtctcagaaaacgcagccc
attatgcatggtactataatacagtttttgctctatggagatcatgacaaagatgtcttt
gccacgggaggacaagtcgagatttccctggaacccaaagcactttacaacaggaccaaa
atcatccccatctcaaagattgacagaacggctactgacgaaggcatcgagaaaaccatt
gaaaatgacttgaacaagctaccagaattgctacaagtggactggccggatggtaaccct
tggccacagaatggtgttcgtcccgctgggactcctttaggagcactcacagtcaaaatt
ctaaacaagaaaggagactccatgtcaaggatgccactagtggaccagaagactgtgatc
aaactgagcatcaagctaacgctagttcagcacgtaggtgctggaaatgatgaagagatt
gtcagtcttgctgcccagcattcagccaagtggggtttcgggtttagaaagattgagaaa
ctgactaacccggggagttataccctgtatcttaccaccatcataaatgaaaccagcgac
acagtgtttggaggcagagaacttccaagctacaaactccattttaaaatcacagagggt
agtgctgaggcttttgttatggatggagtgagctccactcttcatgtaggggtgcctttc
gacattcctctgcagctaaaagatgcatatggaaactcagcgatgcctccttctggtctc
aaacctttacttgcatgcagtgacctggctctgagttatgagactgtggacagctgcggg
aaaaagttgatcatcagaggtgtcaaagcaaaaggaaaagtcctgaattaccaacaatcc
cagacgtatgatctaaaagtgaccctgcctggcctgaaaaaagacacacagacaaccaag
atcagccttctgcctggtaacccacacaccctccatgtgaagggagaaggaaacttcttc
atattagagaatggaaaccctgccaggtttgatgttgaaattcatgatgaggctggaaac
atcaccgctcactccaagcaaaccgttcgatgcaaggttgatggccttcctcctgcagca
attgactgcagtcgcacaggagcaggccagcttgtgacaaaacccatagaacttaaattt
accacaggagaaccacacatgctaagagttgtgtttgagatacttaattcaaaaaccgta
gcaaaagtcttggtgcagttgaaggtgatacccagtaaaagagtggtcctgatcaagctc
tggtctagtcaaggtgatgagaatctagagctgaaggacaaggaaaagatcgagtggctg
gctggaggctcactggagaaactggtctataagctgtatgatgaggctggcaggcaggtt
cttctcactgatgaaatagcctctaagatcaaggtcaactggacaagaactcttaatctg
aaagatgttgcacaggggaagcttcctgttgtacaagtgtccaagcaggtgcaagatgag
cagttctgcctggtgtcctatcaggaagagagtgtgtctgtctcttttacgatagtacct
catccagatgatccagaaagcctcaaagcaacggagctccaaaacccagtgaagctgggt
gaaactgtatctgaaaacctcaacttggaacttgtggaccagtataaaaatccaaccaag
acattaacgcccgcatgtgtcaaccacatgactgtggaagctgagggactggacaaatct
gatgtcaccttcaaatggcaggagagcagtaggtctatccaggtggaaggaatacgtttc
cagactgggacacctggcatccgagagatgcgcttcaaatactcgagctacatggcaaat
gtgataattaaagtaactgctggagatccttcacagcttaaacttgtcagtgggcctaag
gagcctttgcaggtggtaaatgaccatagtatccccacaccgtttgttgtccaactcttt
gacaagtgggggaacacctcttcagacaagagggttgtggtggaattgaggtcttcactg
ccagcactgaaggtgacgacaccagttacctcacaaccagtgaattcagaaggaaaagtc
tctttcactgtagatagtgtgagcggaccaaagggctcctatcagctggactttagaggt
tccttcaacaacaaacccattcccggtccatcagtggatctcacagttttaccggatccc
aacaaaccagtgaagctgttagtggagtatgacaccgcagccaagattcgtgctggaggc
accttcccagtgttcttggtgactgtgatgtcagatgaaggaatcccaatgacaactttt
aacccagctgctgtgtccatgtttctgtgggagggagagccatcagaacatcacaatgcc
actgagctcaagtgtagtgtgcccatgaaaaatgacaggacaaactgtttccactttaga
gataaagtaatcccaacacgtaccggaaagtgcaccatccagttttctctgcatgtcggc
cagacagaaaacctgcacagtgatcagatacccataaatgtggtggccaatcagcctgtc
agactgggacccaccgtccagccaccggccccagttgtttcctgcagcacagacgttgcc
agtcgcacattggtgaacaatttgactctgaggatcatggactcctatgaaaacccagct
ggacaggacctgcaggggagggtggttgtctcaatagcaagtgatgatagcagcaaaagt
acccctctgtttgatggaaaacttaatagatatcacatgaatatggtgaaaggagaggtc
cacatcagaaggttgtccatcatggagaatagccccggtgagaacggcagtcagtacact
ctcctcttcaacccggaagtgcctgcgattcccacgcctttggctcctttcaagctcacc
ttccatttttatgtagatgcggtgaaccaacagaagatgtctggactgctgaagaagaaa
gaagatctcagtctcgctgtagagaagctgaaagaagtatttgatgattataagggactc
cttgaaatgctcagaaaacaatacctcactgcagttaacaaagcggttgttatcagagat
cagctgatccagaaaaatgtgggaatgccagagtctccgtctattgctgctattgacaca
ctcttgatggagaagactaatgaaagtgaagcgcttctgcaaggacagaatagagtctgc
tccgtgcaagacagcttcagtgggcagcaggatgttttgggaaagatcggtcacttggcc
catgtgcaagatgatgctgccgctagagtcatctcctggcacattcggggtgacatggat
tgtgtcgtcaccagaacattggaggcagctgaacggatccacaaagacactgggggcagg
cagcaggtcatggccctcgagagcatgtttaggccacaagtgagcagaacattgccacac
ataagaaatggccggatgctctttaattccgttggaaacccggtccacgcaagagaacac
ctgattttccttcaggacaaggagagctgtgacatcgtatttaaaaacatcctcagagac
actattctgattgatgacctgcactctgggaacaactacagacgctcggtggtgcggact
gggattcaatgtcccaccatactgaccaggcagggggacaggatcagttccatgggcaag
tttggaggtttgcagaacaaagccccatcaacaaactcattcccagtgtttggagcccca
caccccccacaatactacattcttcaggaacaaaaagaactgctcagtcagtaccgggca
gctgtggaaaagagtaaggtggcagaaaatgatcataatgactacttaaaaatcatgaac
tcttccgacacaaagaaaaaggaggaagatatggtgaagatgaagaagcagctggcggag
attgaaaggcatcttgattccacacctggacggccagcgaaacggggagctggtgaggct
catggcattgatagaaaaagagctaaataa
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