Solea solea (common sole): 131461008
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Entry
131461008 CDS
T10853
Symbol
tardbpb
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131461008 (tardbpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131461008 (tardbpb)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
131461008 (tardbpb)
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
131461008
NCBI-ProteinID:
XP_058487952
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Position
6:complement(4226438..4232364)
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AA seq
404 aa
AA seq
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MAEVYIRVAEEENEEPMEIPSEDDGTILLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
ILHAPETGWGNIVYVVNYPKDNKRKMEEIDASSAVKMKRGDMKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDGKTGNSKGFGFVRFTEYEAQEKVVSQRHMIDGRWCDCKLPN
SKFFFGQQCPDEPLRSRKVFVGRCTEDMTTDDLRQFFLQYGEVTDVFIPKPFRAFAFVTF
ADDQVAQALCGEDLIIKGVSVHISNAEPKHGNRQYDRTTRFGNGFGAQAFGSSRSGLGSS
TNSSLANFGSFSLNPAMMAAALQSSWGMMGMLASQQQTSTSGSTSSGTSSSRDQSQSFST
GNSNYGTSSAGLGWGTGSNSTTSGSGFSSGFGSSMESKSSGWGM
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagtgtacattcgagtggcggaggaggaaaacgaagagcccatggagattccg
tccgaggatgacggcactattctgctctccaccgtggcagctcaatttccaggagcgtgc
ggcctgcgttttaggagccccgtgtcacagtgcatgcggggagtacgtctagtggaaggg
atcctgcacgcaccagagactggatggggcaatatcgtttatgtcgtcaactatccaaaa
gacaacaaaaggaaaatggaagaaattgatgcctcctctgctgtgaaaatgaagagagga
gatatgaagacatctgatctaattgtacttggtcttccttggaaaacaactgagcaggac
ctcaaagactactttagtacatttggagaagtcatcatggttcaggttaaacgagacggg
aaaactggaaattctaaaggatttggctttgtgaggttcacagagtatgaggcccaagaa
aaagtggtctcccagcgccatatgattgatggaagatggtgcgactgcaagctccctaac
tcaaagtttttctttggacagcagtgtccagatgagccactgagaagccgcaaagttttt
gtcggccgttgcacagaagacatgaccacggatgatttaaggcagttttttctgcagtac
ggagaagtcacggatgttttcattccaaagccattccgtgcctttgctttcgtcacattt
gcagatgatcaggttgcccaggccctctgtggtgaggacctgattatcaaaggtgtcagc
gttcacatctcaaacgctgagcccaaacatggcaataggcagtatgaccggacaacacgc
tttgggaatggtttcggagcacaagcatttggtagcagccgcagtgggttagggagcagc
accaacagtagtctggctaattttggttccttcagtctgaatcctgccatgatggctgct
gctctgcagagtagttgggggatgatgggtatgctagctagccaacagcagacatccact
tcaggcagcacctccagtggaaccagctctagcagggaccagagtcagtctttcagtaca
ggcaacagtaattatggcaccagctcagctggtcttggctggggaacaggttccaactct
acaaccagtggtagtgggtttagctcaggttttgggtccagtatggagtcaaagtcatct
gggtggggtatgtaa
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