Streptomyces solisilvae: I1A49_30990
Help
Entry
I1A49_30990 CDS
T07406
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssoi
Streptomyces solisilvae
Pathway
ssoi03030
DNA replication
ssoi03410
Base excision repair
ssoi03420
Nucleotide excision repair
ssoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I1A49_30990 (ligA)
03410 Base excision repair
I1A49_30990 (ligA)
03420 Nucleotide excision repair
I1A49_30990 (ligA)
03430 Mismatch repair
I1A49_30990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssoi03032
]
I1A49_30990 (ligA)
03400 DNA repair and recombination proteins [BR:
ssoi03400
]
I1A49_30990 (ligA)
Enzymes [BR:
ssoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I1A49_30990 (ligA)
DNA replication proteins [BR:
ssoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I1A49_30990 (ligA)
DNA repair and recombination proteins [BR:
ssoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I1A49_30990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I1A49_30990 (ligA)
MMR (mismatch excision repair)
DNA ligase
I1A49_30990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I1A49_30990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QPI58742
LinkDB
All DBs
Position
7511455..7513692
Genome browser
AA seq
745 aa
AA seq
DB search
MAGEQQSKVPAEARERHARLAEQIEEHRFRYYVKDAPVISDAEFDKLMRELEAQEAEYPS
LRTPDSPTQKVAGAYETAFAHTAFSEVEHRERMLSLDNAFDDEELAAWADRIAKELGSGS
YHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLKGDRVPAL
VEVRGEVFLPRERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGI
GAREGFDIDRLSQAYELLHEWGLPTAAHFKVVDSIEGVREYIAYYGDNEHRHSVEHEIDG
AVVKLDEIPLQGRLGSTSRAPRWAIAWKFAPEEVNTKLVDIRVGVGRTGRVTPYAVVEPI
TVAGSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPA
TCPECDTPLQPAKEGDVDLRCPNGRSCPAQLRERIFYLAGRKSLDIENLGYVAAAALTQP
LEPAEPPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFFATQKGEPK
KNALAMLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEADEEELAAVE
GVGPTIAASLKEWFAVDWHREIVEKWRRAGVRLEEEGGEDEGPRPLEGLTVVVTGTLQSY
TRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQVKVPVLDEDGFGVLLEQG
PDAAREVAMTPPEEAAEDSPEESGE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagtcaaaggtccccgccgaggcgcgggagaggcatgccaggctc
gctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgcgccggtcatcagc
gacgccgagttcgacaagctgatgcgcgagctggaggcgcaggaggcggagtatccctcg
ctccgtacgcccgattcgccgacccagaaggtcgcgggggcgtacgaaactgcctttgcc
cacacggcgttctccgaggtcgagcaccgcgagcggatgctcagcctggacaacgcgttc
gacgacgaggagctggccgcctgggcggaccgcatcgccaaggagctgggcagcggctcg
taccacttcctgtgcgagctgaaggtggacggcctcgcggtcaacctcacctatgagcac
gggcggttgacccgcgccgcgacccgtggcgacggccgcaccggcgaggacatcaccccc
aatgtgcggacgatcgccaagatccccaaccggctgaagggcgaccgtgtcccggcgctg
gtggaggtgcgcggcgaggtcttcctgccccgtgagcggttcgaggagctcaacgccggg
ctggtggaggcgggcaagccgccgttcgccaacccgcggaacgcggcggcgggttcgctg
cgccagaaggacccgaaggtcaccgcgtcccggccgctggacatggtggtgcacggcatc
ggggcgcgcgagggcttcgacatcgaccggctgtcgcaggcgtatgagctgctgcacgag
tgggggctgcccaccgccgcccatttcaaggtggtggactcgatcgagggcgtgcgcgag
tacatcgcgtactacggggacaacgagcaccggcactcggtggagcatgagatcgacggc
gcggtcgtcaagctggacgagatcccgctccaggggcggctcggctccacctcgcgcgcg
ccgcgctgggcgatcgcctggaagttcgcgcccgaggaggtcaacaccaagctggtggat
atccgggtgggtgtggggcgcacggggcgggtgacgccttatgcggtggtcgagccgatc
acggtcgcgggttcggaggtcgaattcgcgacgttgcacaaccaggatgtcgtcaaggcc
aaaggcgtgctgatcggtgacaccgtggtgctgcgtaaagcgggcgatgtcattccggaa
atcctgggcccggtcgtcgatctgcgggacggcagcgagcgggaattcgtgatgccggcc
acctgtccggagtgcgatacgccgcttcagcccgccaaggagggcgatgtcgatctgcgg
tgccccaacggccgctcctgccccgcgcagctgcgcgagcggattttctatctcgcgggg
cggaaatccctggacatcgagaacctcggctatgtcgccgcggccgccctcactcagccg
ctggaaccggccgaacctccggtgaaggacgagggcgatctcttcgacctgaagatcgaa
caactgctgcccattcggtcgtatgtcctggacccggacagcggactgcccaagcgcgat
ccggagaccggtgaggagaaggtcgtcaccttcttcgccacccagaagggcgagccgaag
aagaacgccctggcgatgctggccaatatcgaggcggccaaggagcgcccgctggcccgg
atcatcaccggcctttcgatccgtcatgtcggccccgtggccgccaccgcgctggcccgt
gaattccgctcgctggaccggatcgccgaggccgacgaggaggagctggcggccgtggag
ggggtcgggccgaccatcgccgcctcgctcaaggagtggttcgcggtcgactggcaccgc
gagatcgtcgagaaatggcggcgggccggggtccggctggaggaggagggcggcgaggac
gaaggccctcgtccgctggagggcctcaccgtcgtggtcaccggaacactccagtcgtac
acccgggatggggccaaggaggcgctacagagccgtggtgccaaagtcaccggatcggtt
tcgaaaaagaccgatttcgtggtagtcggcgacaatccgggctcgaagtacgacaaggcc
atgcaagtgaaggttccggtgctcgatgaggacggatttggcgtcctgctcgaacagggc
cccgacgcggccagagaggtcgcgatgacgcccccggaagaggccgcggaagactccccg
gaagagtccggggagtag
DBGET
integrated database retrieval system
