Shewanella spartinae: K0I31_12415
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Entry
K0I31_12415 CDS
T09209
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03030
DNA replication
sspa03410
Base excision repair
sspa03420
Nucleotide excision repair
sspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I31_12415 (ligA)
03410 Base excision repair
K0I31_12415 (ligA)
03420 Nucleotide excision repair
K0I31_12415 (ligA)
03430 Mismatch repair
K0I31_12415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sspa03032
]
K0I31_12415 (ligA)
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_12415 (ligA)
Enzymes [BR:
sspa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0I31_12415 (ligA)
DNA replication proteins [BR:
sspa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0I31_12415 (ligA)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0I31_12415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0I31_12415 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0I31_12415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0I31_12415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QYJ92436
LinkDB
All DBs
Position
complement(2811079..2813088)
Genome browser
AA seq
669 aa
AA seq
DB search
MQAIQDEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQ
RVGGEALSKFNQVAHLKPMLSLDNVFSEEEFNAFYKRVGDKLPEAPAFCCEPKLDGLAVS
ILYRDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAAFE
AVNDKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAASHF
EQLMQLKEWGSPVSSEVKVCEDIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQTL
GFVAKAPRWATAYKFPAQEEITLLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNATLHN
ADEIARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQPIQFPPQCPVCGSDVERVEG
EAVARCTGGLYCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVTSPADLFKLTAS
AITMLDRMGMKSATNLVNALEAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEKLKQ
ADAETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLLQAGVHWPDIEEVAEEALSLKGQT
WVLTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDE
AELLAILGS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccatacaagacgagattaaacagttaaccgacgagcttaatcagcacaactat
cgctactatgtcgatgacgcgccctcgatccccgacgccgaatatgaccgtctgatgcgt
cgcctgcaggagctggaggccgagcatcccgagctggcgctggccgactcgccaacccag
agagtcgggggcgaggcgctgagcaagtttaatcaggtggctcacctcaagcccatgttg
agcctggataacgtctttagcgaagaggagttcaacgccttctataagcgtgtcggcgat
aagctgccggaggcgccggcattttgctgtgagcctaaactcgacggtctggcggtgagt
atcctctaccgcgatggcgtgtttgagcgcgccgccacccgtggtgatggcaccgtcggt
gaagacatcaccgagaacgtgcgcaccatcaaatctgtgccattgagacttagaggcagc
ggtttcccgccactgctcgaggtgcgcggcgaagtctttatgcctaaggcagctttcgag
gcggtcaacgataaggcccgcgccaagggcgagaagcttttcgtcaatccgcgtaatgcc
gccgccggtagtctgcgtcagctagacagtaagatcaccgccagccgctccttggcattc
tatgcctatgccctgggcgtggtggagccagaaacctggccgctggcagccagccatttc
gagcagttgatgcagcttaaagagtggggcagtccggtgagcagtgaagtcaaggtatgt
gaggatatccccagcgtgctggcctattatcaggacatactgacccgtcgcagcgagctg
gcctatgagattgatggcgtggtgcttaaggtgaatgatatcgcccagcagcagactctt
ggtttcgtggctaaggcgcctcgctgggccaccgcctataagtttccggcccaggaggag
atcaccctgctcgaaggggtagacttccaggtgggccgtaccggcgcggtgaccccggtt
gcgcgcctgcaacctgtctttgtcggcggggttaccgtctccaacgccactttgcataac
gccgatgagatcgcccgtctcggggtgatgataggcgatagcgtgatcatccgccgcgcc
ggtgacgtgatccctcaggtcgttgccgtggtgcccgagaagcgcccgagtgatgcccag
ccgatccagttcccgccgcaatgccccgtgtgtggcagcgacgtggagcgcgtcgagggt
gaagcggttgcccgttgtaccggtggtctctattgtgaggcccagcgtaaggaggcgatc
aagcacttcgcctctcgcaaggcgttagatattgatggcatgggtgacaaggtggtggag
cagctgatcgataaagagctggtgaccagccctgcggatctcttcaagttgaccgcctcg
gcgatcactatgctggatcgtatggggatgaagtcggccactaatttggtcaatgccctg
gaagcggccaagcaaaccacctttgcccgtttcctctattcgctggggatcagggaggta
ggtgaagccaccgccgccaacctggctaactatttcaagacccttgagaaactcaagcag
gcggacgccgagacctttatgaaggttgacgatgtgggggtgatcgtcgcccagcatctg
gtgcatttcttcgagcagccccataaccttgaggtgatagacggcctgttgcaggccggc
gtgcactggcccgacatcgaagaggttgccgaagaggcgctttccctgaaggggcagacc
tgggtattaaccggcaccctgacgcaactcaatcgcaacgatgccaaggctaagctgcag
gcattaggtgccaaggtggcaggcagcgtctcgaaaaataccgattgcttggttgccgga
gaggccgctggctctaagttgaccaaggcgcaggagcttggagttaaggtgatcgatgag
gcagagctcttggcaatcctaggctcttaa
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