Salvia splendens (scarlet sage): 121746392
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Entry
121746392 CDS
T07627
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121746392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121746392
Enzymes [BR:
sspl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121746392
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121746392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
121746392
NCBI-ProteinID:
XP_041996130
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All DBs
Position
9:complement(23493141..23506539)
Genome browser
AA seq
1221 aa
AA seq
DB search
MSAIKFSVMVSLFNWMQKSKSSSIKRSKFRKFLDTFCRPKNGADYFAAIRLILPALDRER
GSYGLREHVLATCLIDALGISRDSPDSQRLLNWRKGGAKSGAFAGNFALVAAEVLQRRQG
MSSGELTILELNELLDRLSTSDNRSEKIYVLSELIRKTNVQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLQDHSQRHKRQDIEVGKPVRPQLALRVSNAAAA
WKKLHGKEVVVECKFDGDRIQIHKNGADINFFSRNFLDHPEYGYAMSDIIRENILVDRCI
LDGEMLVWDKSANRFAEFGSNQEIAKAAKDGLDTDRQLCYVAFDILYAGDTSVIHQSLKE
RHQLLQQFVKPIAGCLEILVPNGGLNTHRPAGEPCWSLIVHDVDGIERFFKETIDNRDEG
IVLKDLSSKWEPSDRSAKWMKLKPDYIRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAE
RPSPNAYPKRFLSFCRVGTGLSDEELSAVVTKLKPYFRKYEYPKKLPPNFYQVTNNSKER
PDVWVESPEKSIIVSITSDIRTIRSEVFTAPYSLRFPRIDRVRYDKPWHECLDVQSFVEL
VHSSNGTMQRAMDDTVIPENNTRRKKLSRGTKKNVSVVPSHFIQTDVSGVKGETSIFSNM
IFYFVNVPILHSLDSLHKLVVENGGTFSMNLNSSVTHCIASESKGIKFQAAKRQGDVIHY
SWLLECCTQKQSLPLHPKYFLFLSDETKKKLEEEVDEFSDSYFLDLNVTELEQILNNINK
IEDSEAIEYCKKFCPREEWVRFHGCHVYFHLPMQFSKYRNCEVPFELAIRRMKVEICTGG
GSIADTLSHATHLVIVCSPELGFDFDTLLNSFSEAQRLVLHRRSLQIVKSQWLDDCFERN
QKLPEDIYNLKPLQFQQVSSGESDEHKHAGEENDSLSRDASSSFGGVREENAAPHKPRVV
SLPDGVTKRRRGGPSGTSTGKRKPLANLPRKTRPRATKKPAKISDYESDNDASSGDKAHF
EVRSTDCGSSAKVDNRKRAALNQPRRARAARLRNKPVEINDNESDEGAAAVEEKTTVGNF
KPNPSTNERLRDTPSQQPVPDLHQTEVVEGSIPDTGKAVEQEIAEPSEYIARFDKSGVGQ
SSSKNPGEEYVDPVQSMLLSMLPGLATNKVESMGPVREEAGTRAPDPVNEEYKVGMDAEN
KAVKKRKVSYKDMASELLKDW
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccataaagttcagtgtaatggtgagcctcttcaactggatgcagaagagcaag
tcctcctccatcaagcgctccaaattccgcaagtttctcgacaccttctgccgccccaaa
aacggcgccgactacttcgccgccatccgcctcatcctccccgccctcgaccgcgagcga
ggctcctacggtctccgcgagcacgtcctcgccacctgcctcatcgacgccctcggcatc
tctcgcgactctcccgactcccagcgcctcctcaactggcgcaagggcggcgccaagtcc
ggtgccttcgctggaaacttcgctctcgtcgccgccgaggtgcttcagcggaggcaggga
atgtcttcaggggaacttactatactagagttaaatgaactacttgatcgtttgtccact
tctgataatagatcagaaaagatttatgttctttctgaactgataaggaaaacaaatgtt
caagaaatgaagtggataatcatgataattctcaaagatcttaagctggggataagtgaa
aagagcatatttcatgaatttcaccctgatgctgaggacttgttcaatgtcacctgtgat
ctaaaactcgtttgtgaaaagttacaagatcacagccagcggcataagcgacaggacatt
gaagttggcaaacctgtccgacctcaactagctttgagagtgagcaatgcggctgctgcc
tggaaaaagcttcatggaaaggaagtagtcgttgagtgcaaatttgatggtgatcgcatc
caaatccacaaaaatggagctgacataaattttttctcaaggaattttcttgatcatcca
gaatatggatatgccatgtcagacattataagagagaatattctggtggacagatgtatt
cttgatggtgaaatgttggtctgggacaaatctgcaaatcgttttgcagagtttggttca
aatcaagaaatagccaaggctgccaaggatgggcttgataccgatcgacagctgtgctat
gttgcgtttgacatcctttatgctggagataccagtgttattcaccagagcttgaaggag
aggcatcaacttcttcagcaatttgtcaaacctatagcaggttgtttggaaattttggtt
cctaatggtggccttaatacacatcgtcctgctggggaaccatgttggtctctaattgtt
catgatgttgatggcattgagaggtttttcaaagaaaccattgataacagagatgaagga
atcgtcctgaaagatctcagctctaaatgggagcctagtgatcgcagtgcaaagtggatg
aagttgaagcctgattacatccgagcaggctccgatttagacgttcttataataggaggt
tactacggttctggacgtcacggaggcgaggtagcacaatttcttgtgggccttgcagag
cgtccaagcccaaatgcatatccaaaacgatttctttcattttgcagagtgggtacagga
ctttctgacgaagagctcagtgctgttgtcaccaaattgaagccctatttcaggaaatat
gaatatccaaagaaactgcctccaaacttttatcaagttacaaataattcaaaggagagg
ccagatgtttgggttgagagcccagaaaaatcaattatagtttccataaccagtgatatt
cgaacaatcaggtcagaggtatttactgctccttatagcttgagatttccgcggattgat
cgagtgagatatgacaagccttggcatgagtgccttgatgtccagtcttttgttgaatta
gtccattcaagcaatggtactatgcaaagggcaatggacgacacagttatcccggaaaat
aacacaagacgtaaaaagttatctagaggaacaaagaagaatgtctctgttgttccttcc
cacttcattcaaactgatgtttctggggttaagggtgaaacatcaatattttcaaacatg
atattctactttgttaatgtgcctatattgcactctcttgattccttgcacaaattggtg
gttgagaatggcggcactttttcaatgaatttgaacagttcggttactcactgtatagca
tctgaaagtaaaggaatcaaatttcaagctgcaaagcgccagggagatgttattcattac
tcttggctccttgaatgttgtacgcagaagcagtctctccctttacacccaaagtatttt
ctttttctatccgatgaaacaaagaaaaagctggaagaagaagtcgatgagttctccgat
tcctactttttggatttgaatgtgacagaactggaacagatattaaacaacatcaataag
attgaagattccgaagcaatagagtactgcaagaaattctgtcccagggaggagtgggtt
cgctttcatggttgtcatgtttacttccacctacccatgcaattttcaaaatatagaaac
tgtgaagttccatttgaactagctattagaaggatgaaggttgaaatctgcactggaggt
ggcagtattgcagacactctttctcatgctactcatttggtgattgtctgtagtccagaa
cttggtttcgactttgatacacttttgaatagtttttcagaagcacagaggcttgttttg
caccgtagaagtttgcaaattgtaaagtcccagtggttagatgattgttttgagagaaac
cagaagttgcctgaggacatatataatttgaagcccttgcagtttcaacaagtatcaagt
ggggagagtgatgaacacaaacatgctggagaagaaaatgatagcttgtcgagagatgct
tcatcttcttttggaggggtgagagaagagaatgctgcaccacacaagccaagagtagtc
agcttgccggatggggtcacgaaaaggagaagaggtggacccagtgggacgagtactgga
aaacgcaaaccacttgccaatctgccccggaaaacaagaccacgggccacaaagaagcct
gctaagatcagtgattatgaatccgataatgatgcatcttctggtgacaaggcacacttt
gaagtcaggagcacagattgtgggagttccgcgaaggtagacaatagaaagagagcagct
ctaaatcaacctagaagagcaagggcagcccggcttagaaacaagcccgtcgagatcaac
gacaacgaatcagatgaaggtgcagcagcagtagaggagaaaactacggttggcaatttc
aaacctaatccatcaacaaatgagaggctccgcgacactccaagccaacagcccgttccc
gatttacatcagaccgaggtagtggaaggttctataccagatactggcaaagcagtcgaa
caagagattgcagaaccgagcgagtacattgcaagatttgacaagtctggagtcgggcag
agcagcagcaagaacccaggtgaagaatatgttgatccggttcaatcaatgctactgagc
atgttaccggggcttgcaacgaacaaggtggagagcatgggaccggttcgtgaagaggct
ggaacaagagctcctgatcctgtcaatgaagaatataaagtgggaatggatgcagaaaat
aaagcagttaagaaacggaaagtaagctacaaggatatggcaagtgaacttctcaaggat
tggtga
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integrated database retrieval system
