Salvia splendens (scarlet sage): 121768724
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Entry
121768724 CDS
T07627
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121768724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121768724
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121768724
Complex C
U5 SnRNP specific factors
121768724
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
EFL1
Roc
Septin
Peptidase_C58
SRPRB
Ras
FeoB_N
SOI
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
121768724
NCBI-ProteinID:
XP_042021198
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All DBs
Position
15:14791834..14796723
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AA seq
988 aa
AA seq
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MDDNLYDEFGNYIGPEIDSDQESDREEEEEELPDRTEDEEAMSDDEHGPGKPNGWLTTTE
DVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVRNLKFELGVKDS
TTYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLI
VDAGEGVLVNTERAIRHAIQDRIPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
IMAASSTAGNVQVIDPALGNVCFASSSAGWSFTLQSFAKLYVKLHGVPFDANKFASRLWG
DYYYEPDTRSFKKKPPVSGAERSFVQFVLEPLYKLYSQVIGEHKKSVEATLSELGVTLSN
AAYRLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAPRKVEHIYTGPKDSPIYEAM
ENCDASGPLMVNITKLYPKSDCSVFDAFGRVYSGEIMAGQTVRVLGEGYSPDDEEDMTVK
EATKLWVYQARYRIAISRAPPGSWVLIEGVDASIMKTATLCNLEYNEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGIV
SIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPEKQGPNILLDDTLSSEVDKSLLSAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDAKVAPEPLNRQSGQIIPTSRRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQAGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCVSIFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatctttacgatgagtttggcaactatattggacctgaaatcgattccgat
caggagagtgatagggaggaggaagaggaggaactgcctgaccggaccgaggatgaggag
gctatgtctgatgatgaacatggccctggaaaaccaaatgggtggctaacaacgactgag
gatgttgatatggatggccaaattgtcctagccgaggacaaaaaatactacccaactgct
gaggaggtctatggcgaagaagtcgaaactttagttatggatgaagatgagcagccactt
gaacagcctattattaagcctgtgcgaaatctcaagtttgagttgggggttaaggattca
actacctatgtatcaacacagttccttttgggtctcatgtcaaaccctatgctggtgagg
aatgttgctttagtaggccacctgcactgtgggaagacgactttcatggacatgttggtc
gagcagacacatcacatatcaacctttgatcagaacagcgagaaacatatgcgatatact
gatactagaattgatgagcaggagaggaggatatccatcaaggcggtgccaatgtcactt
gttctagaggatagcaattcgaaatcatatctttgcaatgttatggatactcctggtcat
gttaacttttctgatgagatgacagctgctctgagacttgctgatggtgcggtgttaatt
gttgatgctggagaaggagttctggtaaacacagaaagggcaatacgccacgcaatccaa
gaccgcatccccattgtagttgtgataaacaaggtggacagattaataactgagctcaag
ttgcctccaaaggacgcgtaccacaaactaaggcacacaattgaagtcatcaacaaccac
attatggctgcatcttcaactgctggaaatgttcaagttattgaccctgcccttggaaat
gtttgtttcgcaagttccagtgctggatggtcgtttaccttgcaatcatttgctaagcta
tatgttaaactccatggtgttccatttgatgctaacaaatttgcctctcgcctttggggt
gattattactacgaacctgataccagaagttttaagaagaaacctcctgtaagtggagca
gaacggtcctttgttcagtttgtgcttgaacctctttataaattatatagtcaagtgatt
ggagaacataaaaagagtgtagaggctacactctctgaactcggagtgactttgagtaat
gcagcttatcgcttgaatgttaggccactgttaagattggcgtgtagctctgtttttggt
agtgccacagggtttacagacatgctggttcaacacatcccatctgcaaaagatgctgca
ccgcggaaggttgagcacatctatactggtcctaaggactccccaatttatgaggccatg
gagaactgtgatgcatcaggtcctctaatggttaatattaccaaactgtaccctaaatca
gattgcagcgtctttgatgccttcggcagggtctacagtggagaaattatggctggccag
acggtacgtgtactgggagaagggtattctcccgatgatgaagaagacatgacagtgaaa
gaagcgaccaaattatgggtctaccaagctcgttataggattgctattagcagagcccct
cctggttcttgggttttaattgaaggtgtggatgcttccattatgaagactgccacactt
tgcaacttggaatataatgaagatgtgtatatatttagaccccttcagttcaacactctt
cctgtggtgaaaactgctaccgagccattgaatcccagtgagctgccaaaaatggtggag
ggtcttaggaagatcagcaaaagctacccattagctatcacaaaggttgaagaatctggg
gagcatacaattttgggtactggagagttgtacttggattccataatgaaggacctcagg
gagctttattcagaagtggaagtaaaggtggcagatcctgtcgtctcattttgtgaaaca
gttgtggaatcctcttcaatgaaatgctttgctgaaactccaaacaaaaaaaataaaatt
acaatgattgctgagccactggagagaggacttgcagaggacattgaaaatggcattgta
agcattgactggccaaggaaaaagcttggcgacttcttccagacaaagtatgactgggat
ttgctagctgcgcggtctatttgggcatttggtcctgagaagcagggtcctaatattttg
ttggatgatacactgtctagtgaagttgacaagagtttgctcagtgcagttaaagattct
attgtgcaagggtttcagtggggagctcgagaaggccctctatgcgacgagccaatcaga
aatgttaaatttaaaatagtggatgccaaggttgctcctgagccactgaaccgtcaatcc
ggccagatcattccaacttctcgacgcgtggcttattcggctttccttatggctacacct
aggctcatggaaccagtgtattatgtggagatacaaactccaatagactgtgtttctgca
atatacacagttttatcgcgtaggcgtggtcacgtcactgccgacgttccacaggcaggg
accccagcctacattgttaaggcatttttaccagtgatagagtcgtttggatttgagaca
gacttgaggtatcatactcaagggcaggcattttgcgtatccatatttgatcactgggct
atcgtccccggagatcctttggataaaagtatagttttacgtccgttggagccagcccca
attcaacatttagctcgtgaatttatggtgaagacgaggcgccgcaagggaatgtcggaa
gatgtgagcattaacaaattcttcgatgaggctatggttgttgaactggctcagcaggct
gccgatctccatcaacaaatgatctga
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