Salvia splendens (scarlet sage): 121771813
Help
Entry
121771813 CDS
T07627
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121771813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121771813
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121771813
Complex C
U5 SnRNP specific factors
121771813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
EFL1
Roc
Septin
Peptidase_C58
SRPRB
FeoB_N
Ras
DO-GTPase2
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
121771813
NCBI-ProteinID:
XP_042024636
LinkDB
All DBs
Position
16:15211267..15216078
Genome browser
AA seq
988 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIDSDQESDREEEEEELPDRTEDEEAMSDDEHGPGKPNGWLTTTE
DVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVRNLKFELGVKDS
TTYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLI
VDAGEGVLVNTERAIRHAIQDRIPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
IMAASSTAGNVQVIDPALGNVCFASSSAGWSFTLQSFAKLYVKLHGVPFDANKFASRLWG
DYYYEPDTRSFKKKPPVSGAERSFVQFVLEPLYKLYSQVIGEHKKSVEATLSELGVTLSN
AAYRLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAPRKVEHIYTGPKDSPIYEAM
ENCDASGPLMVNITKLYPKSDCSVFDAFGRVYSGEIMAGQTVRVLGEGYSPNDEEDMTVK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLEYNEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGIV
SIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPEKQGPNILLDDTLSSEVDKSLLSAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLNRQSGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCVSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatctctacgatgagtttggcaactatattggacctgaaatcgattccgat
caggagagtgatagggaggaggaagaagaggaactgcctgaccggactgaggatgaggag
gctatgtctgatgatgaacatggccctggaaaaccaaatgggtggctaacaacgactgag
gatgttgatatggatggccaaattgtcctagccgaggacaaaaaatactacccaactgct
gaggaggtctatggcgaagaagtcgaaactttagttatggatgaagatgagcagccactt
gaacagcctattattaagcctgtgcgaaatctcaagtttgagttgggggttaaggattca
actacctatgtatcaacacagttccttttgggtctcatgtcaaaccctatgctggtgagg
aatgttgctttagtaggccacctgcactgtgggaagacgactttcatggacatgttggtc
gagcagacgcatcacatatcaacctttgatcagaacagcgagaaacatatgcgatatact
gatacgagaattgatgagcaggagaggaggatatccatcaaggcggtgccaatgtcactt
gttctagaggatagcaattcgaaatcatatctttgcaatgttatggatactcctggtcat
gttaacttttctgatgagatgacagctgctctgaggcttgctgatggtgcggtgttaatt
gttgatgctggagaaggagttctggtaaacacagaaagggcaatacgccatgcaatccaa
gaccgcatccccattgtagttgtcataaacaaggttgacagattaataactgagctcaag
ttgcctccaaaggacgcgtaccacaaactaaggcacacaattgaagtcatcaacaaccac
attatggctgcatcttcaactgctggaaatgttcaagttattgatcctgcccttggaaat
gtttgtttcgcaagttccagtgcaggatggtcgtttaccttgcaatcatttgctaagcta
tatgttaaactccacggtgttccatttgatgctaacaaatttgcttctcgcctttggggt
gattattactacgaacctgataccagaagttttaagaagaaaccacctgtaagtggagca
gaacggtcctttgttcagtttgtgcttgaacctctttataaattatatagtcaagtgatt
ggagaacataaaaagagtgtggaggctacactctctgaactcggagtgactttgagtaat
gcagcttatcgcttgaatgttaggccactgttaagattggcatgtagctctgtttttggt
agtgccacggggtttacagacatgctggttcaacacatcccatctgcaaaagatgctgca
ccgcggaaggttgagcacatctatactggtcctaaggactccccaatttatgaggccatg
gagaactgtgatgcatcaggtcctctaatggttaatattaccaaactgtatcctaaatca
gattgcagcgtctttgatgccttcggcagggtctacagtggagaaattatggctggccag
acggtacgtgtactcggagaaggatattctcccaatgatgaagaagacatgacagtgaaa
gaagtgaccaaattatgggtctaccaagctcgttataggattcctattagcaaagcccct
cctggttcttgggttctaattgaaggtgtggatgcttccattatgaagactgccacactt
tgcaacttggaatataatgaagacgtgtatatatttagaccccttcagttcaacactctt
cctgtggtgaaaactgctacagagccattgaatcccagtgagctgccaaaaatggtggag
ggtcttcggaagatcagcaaaagctacccattagctatcacaaaagttgaagaatctggg
gagcatacaattttgggcactggagagctgtacttggattccataatgaaggacctcagg
gagctttattcagaagtggaagtaaaggtggcagatcccgttgtctcattttgtgaaaca
gttgtggaatcctcttcaatgaaatgctttgctgaaactccaaacaaaaaaaataaaatt
acaatgattgcggagccactggagagaggacttgctgaggacattgaaaatggcattgta
agcattgactggccaaggaaaaagcttggcgacttcttccagacaaagtatgactgggat
ttgctagctgcgcggtctatttgggcatttggtcctgagaagcaggggcctaatattttg
ttggatgatacactgtctagtgaagttgacaagagtttgctcagtgcagttaaagattct
attgtgcaagggtttcagtggggagctcgagaaggccctctatgcgacgagccaatcaga
aatgttaaatttaaaatagtggatgccaagattgctcctgagccactgaaccgtcaatcc
ggccagatcattccaactgctcgacgcgtggcttattcggctttcctcatggctacacct
aggctcatggaaccagtgtattatgtggagatacaaactccaatagactgtgtttctgca
atatacacagttttatcgcgtaggcgtggtcacgtcactgctgacgttccacagccaggg
accccagcctacattgttaaggcatttttaccggtgatagagtcatttggatttgagaca
gacttgaggtatcatactcaagggcaggcattttgcgtatccgtatttgatcactgggct
atcgtcccaggagatccgttggataaaagtatagttctacgtccgttggagccagcccca
attcaacacttagctcgtgaatttatggtgaagacgaggcgccgcaagggaatgtcggaa
gatgtgagcattaacaaattcttcgatgaggctatggttgttgaactggctcagcaggct
gccgatcttcatcaacaaatgatctga
DBGET
integrated database retrieval system
