Salvia splendens (scarlet sage): 121792338
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Entry
121792338 CDS
T07627
Name
(RefSeq) 5'-3' exoribonuclease 4-like
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
121792338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121792338
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121792338
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
121792338
NCBI-ProteinID:
XP_042046177
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All DBs
Position
2:34066823..34079158
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AA seq
980 aa
AA seq
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MGVPAFYRWLADRYPLCIVDVVEEEPGQDERGVPRPVDVSRPNPNGIEFDNMYLDMNGII
HPCFHPDGKPAPTTYADVFKSIFDYIDHVVSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAAAAEAEEENLRKEFELEGEKLLPKGKTETSDSNVITPGTPFMAVLSVALQYYVQ
SRLNRIPGWHFLKVILSDANVPGEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGHQEKCFLCGQAGHLAAECRGGSNGDSTKNADDTPIHKKKY
QFLNIWVLREYLGYELNIPNPPFEIDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAIN
LLMFVYKREFTAMGGYLTDAGEVFLDRVETFVQAVAVHEDQIFKKRTRIQQAYENNEEMK
QRARGQASQIPNASAGDKVKLGEHGYKERYYSEKFGTSDPQKIDEIRTDVVLKFVEGLCW
VCRYYYQGVCSWQWYYPYHYAPFASDLKGLADLEITFFPGEPFKPFDQLLGTLPAASSTA
LPERYRTLMTDPASPIVDFYPNDFEIDMNGKRFAWQGVAKLPFIDEKKLLAETKKLEETL
TEEEQFRNSVMFDLLYVHPRHPLAAQITIYYRLSGIEKSPWPIDAVASAGMNGFLWLTKR
NGLKKVIPSPVCSLEDITNDQALNITYLNPAPHAHIPKPPAGVNMPVKIVKSFDIKPAPV
LWHEDNGGRHHLGKERPQVSGAISGPILGEAAHRLVHNTLNIKSDRMNSRNFHGNQVANR
MRPAGPPGYEMGVSEIQNSQNRHASYRPRAVVPSGYGRYGNNEQGYYNNSNSFSVQHSPH
TPMGSARYIGPPDNLQINRPIYNAQDRYTYQEQHHVLRGGMSALTIDGGSSKGRSLAGSS
PRPSNSVQISQTTAQLPQQRGPLPSPPPKWISKHPAEATEMYYKQQSSVAAGQGGPVKLA
SRYQVKNKTVQNGVDPQLRQ
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcctgctttttaccggtggctggcggatcggtacccgctgtgtattgtggat
gtggtggaggaagaacccgggcaggacgagaggggtgtgccccgccctgtcgatgtttcg
aggccaaaccctaatggcattgagttcgataatatgtatttggatatgaatggtattatt
catccttgtttccaccccgacggcaagcctgcacctaccacttatgcagatgtatttaaa
tctatctttgattacattgaccatgtcgtgtcattggttcgtccaagaaagctcctttat
ttggcaattgatggtgtggctcccagggctaaaatgaaccagcaaaggtctcgtcgtttc
agggctgctaaggatgctgcagcagctgaagctgaagaagaaaatttgaggaaagagttt
gaacttgagggggaaaaactattgccaaaaggaaagactgaaacatctgattcaaatgtt
atcacccctggcaccccatttatggcagtgctctctgtagcacttcaatattatgtgcag
tcaaggttgaaccgcattcccggatggcactttctcaaggttattctttctgacgcaaat
gttcctggtgagggcgagcacaaaattatgtcttatattcgtttacaacgcaatattcct
ggttttgatccaaacaccaggcattgtctatatggcttggatgctgacctgatcatgctc
tcactagctactcatgaagttcacttttcaatactgagagaggtgattactcttcctggg
caccaggaaaaatgcttcctctgtggccaagcaggccatctggcagctgaatgtcgtggg
ggatccaacggtgatagtacaaagaatgcagatgacactcccattcataagaagaagtat
cagtttctcaacatctgggttttgcgagaatacttgggatatgagctgaatattccaaat
cctccatttgaaattgatttcgagaggctggtggatgattttgtgtttttatgctttttt
gtcggcaatgactttcttcctcacatgcccacgttggaaattagagagggcgccataaat
ttgctcatgtttgtatataaaagggaattcactgcaatgggcggttatcttacagatgct
ggtgaggttttcttggaccgggttgaaacttttgttcaggcagttgcggtgcatgaagat
caaatttttaaaaaaagaacccgtatacagcaggcatatgagaataatgaagagatgaag
caaagagcaagggggcaggctagtcaaattcctaatgcttcagcaggggataaggtgaag
ttaggggaacatggatataaagaaaggtattattctgagaaatttggtacatctgatccg
cagaagattgatgaaatacgaacagatgtggttttgaagtttgtggaagggctgtgttgg
gtttgccgctattattaccaaggtgtctgctcatggcagtggtactatccataccattat
gctccatttgcatctgatcttaaaggcttagctgatttagaaatcactttcttcccaggg
gagccttttaaaccctttgatcagttgttgggaaccctaccagctgcaagttctaccgct
ctccctgaaagatacagaacgttgatgactgatcctgcatcacctattgttgatttctat
ccaaatgattttgaaatcgacatgaacggaaaacgctttgcttggcagggtgttgccaaa
ttacctttcattgatgagaagaaattgcttgctgagaccaagaagctcgaggaaacttta
acggaggaagagcagtttcggaatagtgtcatgttcgatttgttgtatgttcatcctcgt
caccctttggcagctcaaataaccatatactatcgtctttctggaattgaaaaatcccca
tggcctattgatgcagttgcaagtgctggaatgaacggatttttgtggttaactaaaagg
aatggcttgaaaaaggttatcccttcacctgtctgcagtttggaagatatcacaaacgat
caagccctaaatatcacatatcttaatccagcacctcatgctcacattccaaaacctcct
gcaggtgttaatatgcctgtaaagatagtgaaatcttttgacataaaaccagccccagta
ttatggcatgaagacaatggtggaaggcaccatctaggcaaagaaagaccacaggtttcc
ggggcaatatctggtcctattttaggagaagctgctcatcgtctggttcacaatacgttg
aacataaagtcggaccgtatgaattctcgcaattttcatgggaatcaggttgccaacagg
atgaggccagctggaccgcctgggtatgaaatgggagtttcagagatccaaaattctcag
aatcgccatgcttcttataggccaagagcagtcgtgccttctgggtatggtcgatatggt
aacaacgaacagggatattataacaactcaaactcttttagtgtccaacacagccctcac
actccgatgggaagtgctcgatacattggccccccagataatttgcaaatcaacaggccg
atttacaatgctcaagatagatatacatatcaggaacagcatcatgttctgagaggcggc
atgtctgcattaactattgatggtggttcttccaaaggcaggtcacttgctggatcttct
ccaaggccgtcaaattctgttcagatatcacagaccactgctcaactcccacagcagaga
ggtccgcttccatctccgcctcctaaatggatcagtaaacatccagccgaggctacagaa
atgtattataagcaacagagttcagtagcagctgggcaagggggaccagtgaagctggct
agccgctatcaggtaaaaaataagacggtgcagaacggcgttgatccacaactccggcag
tga
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